Job request: 21199
- Organisation:
- The London School of Hygiene & Tropical Medicine
- Workspace:
- healthcare_needs_chronic_kidney_disease
- ID:
- jn2wi65a55jxka2n
This page shows the technical details of what happened when authorised researcher Viyaasan Mahalingasivam requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the indicated Requested Actions with the
Pipeline section below, you can infer what
security level
various outputs were written to. Outputs marked as
highly_sensitive
can never be viewed directly by a researcher; they can only
request that code runs against them. Outputs marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
pjvawx2iyokizbek
-
- Job identifier:
-
3wcyxw6tlcwrnq7p
-
- Job identifier:
-
ed5xzmxyrx52ilbv
-
- Job identifier:
-
fabc6ic6qeq6kcwl
Pipeline
Show project.yaml
version: "3.0"
expectations:
population_size: 50000
actions:
2017:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2017
outputs:
highly_sensitive:
cohort: output/input_2017.csv
2017_ckd:
run: stata-mp:latest analysis/ckd.do 2017
needs: [2017]
outputs:
highly_sensitive:
ckd: output/2017_ckd.csv
nockd: output/2017_nockd.csv
moderately_sensitive:
log: logs/2017_ckd.log
2017_ckd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2017_ckd_complete
needs: [2017, 2017_ckd]
outputs:
highly_sensitive:
cohort: output/input_2017_ckd_complete.csv
2017_clean_ckd_complete:
run: stata-mp:latest analysis/ckd_complete.do 2017
needs: [2017, 2017_ckd, 2017_ckd_complete, costs_2017]
outputs:
highly_sensitive:
analysis_dataset: output/2017_ckd_complete.dta
moderately_sensitive:
log: logs/2017_ckd_complete.log
2018:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2018
outputs:
highly_sensitive:
cohort: output/input_2018.csv
2018_ckd:
run: stata-mp:latest analysis/ckd.do 2018
needs: [2018]
outputs:
highly_sensitive:
ckd: output/2018_ckd.csv
nockd: output/2018_nockd.csv
moderately_sensitive:
log: logs/2018_ckd.log
2018_ckd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2018_ckd_complete
needs: [2018, 2018_ckd]
outputs:
highly_sensitive:
cohort: output/input_2018_ckd_complete.csv
2018_clean_ckd_complete:
run: stata-mp:latest analysis/ckd_complete.do 2018
needs: [2018, 2018_ckd, 2018_ckd_complete, costs_2018]
outputs:
highly_sensitive:
analysis_dataset: output/2018_ckd_complete.dta
moderately_sensitive:
log: logs/2018_ckd_complete.log
2019:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2019
outputs:
highly_sensitive:
cohort: output/input_2019.csv
2019_ckd:
run: stata-mp:latest analysis/ckd.do 2019
needs: [2019]
outputs:
highly_sensitive:
ckd: output/2019_ckd.csv
nockd: output/2019_nockd.csv
moderately_sensitive:
log: logs/2019_ckd.log
2019_ckd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2019_ckd_complete
needs: [2019, 2019_ckd]
outputs:
highly_sensitive:
cohort: output/input_2019_ckd_complete.csv
2019_clean_ckd_complete:
run: stata-mp:latest analysis/ckd_complete.do 2019
needs: [2019, 2019_ckd, 2019_ckd_complete, costs_2019]
outputs:
highly_sensitive:
analysis_dataset: output/2019_ckd_complete.dta
moderately_sensitive:
log: logs/2019_ckd_complete.log
2020:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2020
outputs:
highly_sensitive:
cohort: output/input_2020.csv
2020_ckd:
run: stata-mp:latest analysis/ckd.do 2020
needs: [2020]
outputs:
highly_sensitive:
ckd: output/2020_ckd.csv
nockd: output/2020_nockd.csv
moderately_sensitive:
log: logs/2020_ckd.log
2020_ckd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2020_ckd_complete
needs: [2020, 2020_ckd]
outputs:
highly_sensitive:
cohort: output/input_2020_ckd_complete.csv
2020_clean_ckd_complete:
run: stata-mp:latest analysis/ckd_complete.do 2020
needs: [2020, 2020_ckd, 2020_ckd_complete, costs_2020]
outputs:
highly_sensitive:
analysis_dataset: output/2020_ckd_complete.dta
moderately_sensitive:
log: logs/2020_ckd_complete.log
2021:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2021
outputs:
highly_sensitive:
cohort: output/input_2021.csv
2021_ckd:
run: stata-mp:latest analysis/ckd.do 2021
needs: [2021]
outputs:
highly_sensitive:
ckd: output/2021_ckd.csv
nockd: output/2021_nockd.csv
moderately_sensitive:
log: logs/2021_ckd.log
2021_ckd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2021_ckd_complete
needs: [2021, 2021_ckd]
outputs:
highly_sensitive:
cohort: output/input_2021_ckd_complete.csv
2021_clean_ckd_complete:
run: stata-mp:latest analysis/ckd_complete.do 2021
needs: [2021, 2021_ckd, 2021_ckd_complete, costs_2021]
outputs:
highly_sensitive:
analysis_dataset: output/2021_ckd_complete.dta
moderately_sensitive:
log: logs/2021_ckd_complete.log
2022:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2022
outputs:
highly_sensitive:
cohort: output/input_2022.csv
2022_ckd:
run: stata-mp:latest analysis/ckd.do 2022
needs: [2022]
outputs:
highly_sensitive:
ckd: output/2022_ckd.csv
nockd: output/2022_nockd.csv
moderately_sensitive:
log: logs/2022_ckd.log
2022_ckd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2022_ckd_complete
needs: [2022, 2022_ckd]
outputs:
highly_sensitive:
cohort: output/input_2022_ckd_complete.csv
2022_clean_ckd_complete:
run: stata-mp:latest analysis/ckd_complete.do 2022
needs: [2022, 2022_ckd, 2022_ckd_complete, costs_2022]
outputs:
highly_sensitive:
analysis_dataset: output/2022_ckd_complete.dta
moderately_sensitive:
log: logs/2022_ckd_complete.log
2023:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2023
outputs:
highly_sensitive:
cohort: output/input_2023.csv
2023_ckd:
run: stata-mp:latest analysis/ckd.do 2023
needs: [2023]
outputs:
highly_sensitive:
ckd: output/2023_ckd.csv
nockd: output/2023_nockd.csv
moderately_sensitive:
log: logs/2023_ckd.log
2023_ckd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2023_ckd_complete
needs: [2023, 2023_ckd]
outputs:
highly_sensitive:
cohort: output/input_2023_ckd_complete.csv
2023_clean_ckd_complete:
run: stata-mp:latest analysis/ckd_complete.do 2023
needs: [2023, 2023_ckd, 2023_ckd_complete]
outputs:
highly_sensitive:
analysis_dataset: output/2023_ckd_complete.dta
moderately_sensitive:
log: logs/2023_ckd_complete.log
ckd_progression:
run: stata-mp:latest analysis/ckd_progression.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete, 2017_clean_nockd_complete, 2018_clean_nockd_complete, 2019_clean_nockd_complete, 2020_clean_nockd_complete, 2021_clean_nockd_complete, 2022_clean_nockd_complete]
outputs:
moderately_sensitive:
log: logs/ckd_progression.log
output: output/ckd_progression.csv
healthcare_use_overall:
run: stata-mp:latest analysis/healthcare_use_overall.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/healthcare_use_overall.log
output: output/healthcare_use_overall.csv
healthcare_use_albuminuria:
run: stata-mp:latest analysis/healthcare_use_albuminuria.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/healthcare_use_albuminuria.log
output: output/healthcare_use_albuminuria.csv
healthcare_use_ckd3:
run: stata-mp:latest analysis/healthcare_use_ckd3.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/healthcare_use_ckd3.log
output: output/healthcare_use_ckd3.csv
healthcare_use_ckd4:
run: stata-mp:latest analysis/healthcare_use_ckd4.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/healthcare_use_ckd4.log
output: output/healthcare_use_ckd4.csv
healthcare_use_dialysis:
run: stata-mp:latest analysis/healthcare_use_dialysis.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/healthcare_use_dialysis.log
output: output/healthcare_use_dialysis.csv
healthcare_use_transplant:
run: stata-mp:latest analysis/healthcare_use_transplant.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/healthcare_use_transplant.log
output: output/healthcare_use_transplant.csv
absolute_healthcare_use_overall:
run: stata-mp:latest analysis/absolute_healthcare_use_overall.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/absolute_healthcare_use_overall.log
output: output/absolute_healthcare_use_overall.csv
absolute_healthcare_use_albuminuria:
run: stata-mp:latest analysis/absolute_healthcare_use_albuminuria.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/absolute_healthcare_use_albuminuria.log
output: output/absolute_healthcare_use_albuminuria.csv
absolute_healthcare_use_ckd3:
run: stata-mp:latest analysis/absolute_healthcare_use_ckd3.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/absolute_healthcare_use_ckd3.log
output: output/absolute_healthcare_use_ckd3.csv
absolute_healthcare_use_ckd4:
run: stata-mp:latest analysis/absolute_healthcare_use_ckd4.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/absolute_healthcare_use_ckd4.log
output: output/absolute_healthcare_use_ckd4.csv
absolute_healthcare_use_dialysis:
run: stata-mp:latest analysis/absolute_healthcare_use_dialysis.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/absolute_healthcare_use_dialysis.log
output: output/absolute_healthcare_use_dialysis.csv
absolute_healthcare_use_transplant:
run: stata-mp:latest analysis/absolute_healthcare_use_transplant.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/absolute_healthcare_use_transplant.log
output: output/absolute_healthcare_use_transplant.csv
relative_healthcare_use_overall:
run: stata-mp:latest analysis/relative_healthcare_use_overall.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/relative_healthcare_use_overall.log
output: output/relative_healthcare_use_overall.csv
relative_healthcare_use_albuminuria:
run: stata-mp:latest analysis/relative_healthcare_use_albuminuria.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/relative_healthcare_use_albuminuria.log
output: output/relative_healthcare_use_albuminuria.csv
relative_healthcare_use_ckd3:
run: stata-mp:latest analysis/relative_healthcare_use_ckd3.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/relative_healthcare_use_ckd3.log
output: output/relative_healthcare_use_ckd3.csv
relative_healthcare_use_ckd4:
run: stata-mp:latest analysis/relative_healthcare_use_ckd4.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/relative_healthcare_use_ckd4.log
output: output/relative_healthcare_use_ckd4.csv
relative_healthcare_use_dialysis:
run: stata-mp:latest analysis/relative_healthcare_use_dialysis.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/relative_healthcare_use_dialysis.log
output: output/relative_healthcare_use_dialysis.csv
relative_healthcare_use_transplant:
run: stata-mp:latest analysis/relative_healthcare_use_transplant.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/relative_healthcare_use_transplant.log
output: output/relative_healthcare_use_transplant.csv
costs_2017:
run: >
databuilder:v0
generate-dataset analysis/costs_2017.py --output output/costs_2017.csv
outputs:
highly_sensitive:
costs_2017: output/costs_2017.csv
costs_2018:
run: >
databuilder:v0
generate-dataset analysis/costs_2018.py --output output/costs_2018.csv
outputs:
highly_sensitive:
costs_2018: output/costs_2018.csv
costs_2019:
run: >
databuilder:v0
generate-dataset analysis/costs_2019.py --output output/costs_2019.csv
outputs:
highly_sensitive:
costs_2019: output/costs_2019.csv
costs_2020:
run: >
databuilder:v0
generate-dataset analysis/costs_2020.py --output output/costs_2020.csv
outputs:
highly_sensitive:
costs_2020: output/costs_2020.csv
costs_2021:
run: >
databuilder:v0
generate-dataset analysis/costs_2021.py --output output/costs_2021.csv
outputs:
highly_sensitive:
costs_2021: output/costs_2021.csv
costs_2022:
run: >
databuilder:v0
generate-dataset analysis/costs_2022.py --output output/costs_2022.csv
outputs:
highly_sensitive:
costs_2022: output/costs_2022.csv
costs_overall:
run: stata-mp:latest analysis/costs_overall.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/costs_overall.log
output: output/costs_overall.csv
costs_albuminuria:
run: stata-mp:latest analysis/costs_albuminuria.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/costs_albuminuria.log
output: output/costs_albuminuria.csv
costs_ckd3:
run: stata-mp:latest analysis/costs_ckd3.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/costs_ckd3.log
output: output/costs_ckd3.csv
costs_ckd4:
run: stata-mp:latest analysis/costs_ckd4.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/costs_ckd4.log
output: output/costs_ckd4.csv
costs_dialysis:
run: stata-mp:latest analysis/costs_dialysis.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/costs_dialysis.log
output: output/costs_dialysis.csv
costs_transplant:
run: stata-mp:latest analysis/costs_transplant.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/costs_transplant.log
output: output/costs_transplant.csv
relative_costs_overall:
run: stata-mp:latest analysis/relative_costs_overall.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/relative_costs_overall.log
output: output/relative_costs_overall.csv
relative_costs_albuminuria:
run: stata-mp:latest analysis/relative_costs_albuminuria.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/relative_costs_albuminuria.log
output: output/relative_costs_albuminuria.csv
relative_costs_ckd3:
run: stata-mp:latest analysis/relative_costs_ckd3.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/relative_costs_ckd3.log
output: output/relative_costs_ckd3.csv
relative_costs_ckd4:
run: stata-mp:latest analysis/relative_costs_ckd4.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/relative_costs_ckd4.log
output: output/relative_costs_ckd4.csv
relative_costs_dialysis:
run: stata-mp:latest analysis/relative_costs_dialysis.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/relative_costs_dialysis.log
output: output/relative_costs_dialysis.csv
relative_costs_transplant:
run: stata-mp:latest analysis/relative_costs_transplant.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/relative_costs_transplant.log
output: output/relative_costs_transplant.csv
unit_costs_overall:
run: stata-mp:latest analysis/unit_costs_overall.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete]
outputs:
moderately_sensitive:
log: logs/unit_costs_overall.log
output: output/unit_costs_overall.csv
2017_nockd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2017_nockd_complete
needs: [2017, 2017_ckd]
outputs:
highly_sensitive:
cohort: output/input_2017_nockd_complete.csv
2018_nockd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2018_nockd_complete
needs: [2018, 2018_ckd]
outputs:
highly_sensitive:
cohort: output/input_2018_nockd_complete.csv
2019_nockd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2019_nockd_complete
needs: [2019, 2019_ckd]
outputs:
highly_sensitive:
cohort: output/input_2019_nockd_complete.csv
2020_nockd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2020_nockd_complete
needs: [2020, 2020_ckd]
outputs:
highly_sensitive:
cohort: output/input_2020_nockd_complete.csv
2021_nockd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2021_nockd_complete
needs: [2021, 2021_ckd]
outputs:
highly_sensitive:
cohort: output/input_2021_nockd_complete.csv
2022_nockd_complete:
run: cohortextractor:latest generate_cohort --study-definition study_definition_2022_nockd_complete
needs: [2022, 2022_ckd]
outputs:
highly_sensitive:
cohort: output/input_2022_nockd_complete.csv
2017_clean_nockd_complete:
run: stata-mp:latest analysis/nockd_complete.do 2017
needs: [2017, 2017_ckd, 2017_nockd_complete]
outputs:
highly_sensitive:
analysis_dataset: output/2017_nockd_complete.dta
moderately_sensitive:
log: logs/2017_nockd_complete.log
2018_clean_nockd_complete:
run: stata-mp:latest analysis/nockd_complete.do 2018
needs: [2018, 2018_ckd, 2018_nockd_complete]
outputs:
highly_sensitive:
analysis_dataset: output/2018_nockd_complete.dta
moderately_sensitive:
log: logs/2018_nockd_complete.log
2019_clean_nockd_complete:
run: stata-mp:latest analysis/nockd_complete.do 2019
needs: [2019, 2019_ckd, 2019_nockd_complete]
outputs:
highly_sensitive:
analysis_dataset: output/2019_nockd_complete.dta
moderately_sensitive:
log: logs/2019_nockd_complete.log
2020_clean_nockd_complete:
run: stata-mp:latest analysis/nockd_complete.do 2020
needs: [2020, 2020_ckd, 2020_nockd_complete]
outputs:
highly_sensitive:
analysis_dataset: output/2020_nockd_complete.dta
moderately_sensitive:
log: logs/2020_nockd_complete.log
2021_clean_nockd_complete:
run: stata-mp:latest analysis/nockd_complete.do 2021
needs: [2021, 2021_ckd, 2021_nockd_complete]
outputs:
highly_sensitive:
analysis_dataset: output/2021_nockd_complete.dta
moderately_sensitive:
log: logs/2021_nockd_complete.log
2022_clean_nockd_complete:
run: stata-mp:latest analysis/nockd_complete.do 2022
needs: [2022, 2022_ckd, 2022_nockd_complete]
outputs:
highly_sensitive:
analysis_dataset: output/2022_nockd_complete.dta
moderately_sensitive:
log: logs/2022_nockd_complete.log
age_death:
run: stata-mp:latest analysis/age_death.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete, 2017_clean_nockd_complete, 2018_clean_nockd_complete, 2019_clean_nockd_complete, 2020_clean_nockd_complete, 2021_clean_nockd_complete, 2022_clean_nockd_complete]
outputs:
moderately_sensitive:
log: logs/age_death.log
output: output/age_death.csv
age_death_distribution:
run: stata-mp:latest analysis/age_death_distribution.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete, 2017_clean_nockd_complete, 2018_clean_nockd_complete, 2019_clean_nockd_complete, 2020_clean_nockd_complete, 2021_clean_nockd_complete, 2022_clean_nockd_complete]
outputs:
moderately_sensitive:
log: logs/age_death_distribution.log
output: output/age_death_distribution.csv
age_progression_distribution:
run: stata-mp:latest analysis/age_progression_distribution.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete, 2017_clean_nockd_complete, 2018_clean_nockd_complete, 2019_clean_nockd_complete, 2020_clean_nockd_complete, 2021_clean_nockd_complete, 2022_clean_nockd_complete]
outputs:
moderately_sensitive:
log: logs/age_progression_distribution.log
output: output/age_progression_distribution.csv
age_ckd3:
run: stata-mp:latest analysis/age_ckd3.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete, 2017_clean_nockd_complete, 2018_clean_nockd_complete, 2019_clean_nockd_complete, 2020_clean_nockd_complete, 2021_clean_nockd_complete, 2022_clean_nockd_complete]
outputs:
moderately_sensitive:
log: logs/age_ckd3.log
output: output/age_ckd3.csv
age_ckd4:
run: stata-mp:latest analysis/age_ckd4.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete, 2017_clean_nockd_complete, 2018_clean_nockd_complete, 2019_clean_nockd_complete, 2020_clean_nockd_complete, 2021_clean_nockd_complete, 2022_clean_nockd_complete]
outputs:
moderately_sensitive:
log: logs/age_ckd4.log
output: output/age_ckd4.csv
age_dialysis:
run: stata-mp:latest analysis/age_dialysis.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete, 2017_clean_nockd_complete, 2018_clean_nockd_complete, 2019_clean_nockd_complete, 2020_clean_nockd_complete, 2021_clean_nockd_complete, 2022_clean_nockd_complete]
outputs:
moderately_sensitive:
log: logs/age_dialysis.log
output: output/age_dialysis.csv
age_transplant:
run: stata-mp:latest analysis/age_transplant.do
needs: [2017_clean_ckd_complete, 2018_clean_ckd_complete, 2019_clean_ckd_complete, 2020_clean_ckd_complete, 2021_clean_ckd_complete, 2022_clean_ckd_complete, 2017_clean_nockd_complete, 2018_clean_nockd_complete, 2019_clean_nockd_complete, 2020_clean_nockd_complete, 2021_clean_nockd_complete, 2022_clean_nockd_complete]
outputs:
moderately_sensitive:
log: logs/age_transplant.log
output: output/age_transplant.csv
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 06:52:06
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- healthcare_needs_chronic_kidney_disease
- Requested by
- Viyaasan Mahalingasivam
- Branch
- main
- Force run dependencies
- No
- Git commit hash
- 3562181
- Requested actions
-
-
age_ckd3
-
age_ckd4
-
age_dialysis
-
age_transplant
-