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Job request: 2900

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
households-short-report
ID:
vhq3yhh3rzzkn55t
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Emily Nightingale requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  check_hhid:
    needs: [generate_study_population]
    run:  r:latest analysis/check_hhid.R output/input.csv
    outputs:
      moderately_sensitive:
        log: output/check_hhid_log.txt
        tpp_cov: output/household_tpp_coverage.png
        tpp_size_dist: output/household_size_tpp.png
        tot_size_dist: output/household_size_tot.png

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 03:06:24

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
households-short-report
Requested by
Emily Nightingale
Branch
main
Force run dependencies
No
Git commit hash
057b2ec
Requested actions
  • run_all

Code comparison

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