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Job request: 2958

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
households-short-report
ID:
6kznzdnoskyv6fk3
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Emily Nightingale requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    check_hhid
    Status:
    Status: Succeeded
    Job identifier:
    r7l2i63s5cjmjkut

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 100000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  check_hhid:
    needs: [generate_study_population]
    run:  r:latest analysis/check_hhid.R output/input.csv
    outputs:
      moderately_sensitive:
        log: output/check_hhid_log.txt
        fig1: output/household_tpp_coverage.png

  repeat_checks_hhid:
    needs: [generate_study_population]
    run:  stata-mp:latest analysis/repeat_checks_hhid.do 
    outputs:
      moderately_sensitive:
        log: output/statalogs/repeat_checks_hhid.log

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 01:25:34

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
households-short-report
Requested by
Emily Nightingale
Branch
main
Force run dependencies
No
Git commit hash
413651e
Requested actions
  • check_hhid

Code comparison

Compare the code used in this job request