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Job request: 3418

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
households-short-report
ID:
ebw6hlcjymz74xij
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Anna Schultze requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 100000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  check_hhid:
    needs: [generate_study_population]
    run:  r:latest analysis/check_hhid.R output/input.csv
    outputs:
      moderately_sensitive:
        log: output/check_hhid_log.txt
        fig1: output/household_tpp_coverage.png

  repeat_checks_hhid:
    needs: [generate_study_population]
    run:  stata-mp:latest analysis/repeat_checks_hhid.do 
    outputs:
      moderately_sensitive:
        log: output/statalogs/repeat_checks_hhid.log

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 01:52:37

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
households-short-report
Requested by
Anna Schultze
Branch
main
Force run dependencies
Yes
Git commit hash
b467c52
Requested actions
  • run_all

Code comparison

Compare the code used in this Job Request