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Job request: 25277

Organisation:
Bennett Institute
Workspace:
winter_pressures_inequalities
ID:
m6m36bqnw5prfkvd
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Ruth Costello requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_dataset_covid_2021
    Status:
    Status: Failed
    Job identifier:
    l3dyjetc2kzpcpi2
    Error:
    nonzero_exit: Job exited with an error: Something went wrong with the database, please contact tech support

Pipeline

Show project.yaml 
version: '4.0'
# Generates cohorts for COVID outcome.
actions:  
  generate_dataset_covid_2021:
      run: >
        ehrql:v1 generate-dataset analysis/dataset_definition_covid.py 
        --output output/dataset_covid_2021.csv.gz
        --
        --start_date 2021-03-01
      outputs:
        highly_sensitive:
          population: output/dataset_covid_2021.csv.gz

  generate_dataset_covid_2022:
      run: >
        ehrql:v1 generate-dataset analysis/dataset_definition_covid.py 
        --output output/dataset_covid_2022.csv.gz
        --test-data-file analysis/test_dataset_definition_covid.py
        --
        --start_date 2022-03-01
      outputs:
        highly_sensitive:
          population: output/dataset_covid_2022.csv.gz

  generate_dataset_covid_2023:
      run: >
        ehrql:v1 generate-dataset analysis/dataset_definition_covid.py 
        --output output/dataset_covid_2023.csv.gz
        --
        --start_date 2023-03-01
      outputs:
        highly_sensitive:
          population: output/dataset_covid_2023.csv.gz

  generate_dataset_covid_2024:
      run: >
        ehrql:v1 generate-dataset analysis/dataset_definition_covid.py 
        --output output/dataset_covid_2024.csv.gz
        --
        --start_date 2024-03-01
      outputs:
        highly_sensitive:
          population: output/dataset_covid_2024.csv.gz

  generate_dataset_flu_rsv_2018:
      run: >
        ehrql:v1 generate-dataset analysis/dataset_definition_flu_rsv.py 
        --output output/dataset_flu_rsv_2018.csv.gz
        --test-data-file analysis/test_dataset_definition_flu_rsv.py
        --
        --start_date 2018-09-01
      outputs:
        highly_sensitive:
          population: output/dataset_flu_rsv_2018.csv.gz

  generate_dataset_flu_rsv_2019:
      run: >
        ehrql:v1 generate-dataset analysis/dataset_definition_flu_rsv.py 
        --output output/dataset_flu_rsv_2019.csv.gz
        --test-data-file analysis/test_dataset_definition_flu_rsv.py
        --
        --start_date 2019-09-01
      outputs:
        highly_sensitive:
          population: output/dataset_flu_rsv_2019.csv.gz

  generate_dataset_flu_rsv_2021:
      run: >
        ehrql:v1 generate-dataset analysis/dataset_definition_flu_rsv.py 
        --output output/dataset_flu_rsv_2021.csv.gz
        --test-data-file analysis/test_dataset_definition_flu_rsv.py
        --
        --start_date 2021-09-01
      outputs:
        highly_sensitive:
          population: output/dataset_flu_rsv_2021.csv.gz

  generate_dataset_flu_rsv_2022:
      run: >
        ehrql:v1 generate-dataset analysis/dataset_definition_flu_rsv.py 
        --output output/dataset_flu_rsv_2022.csv.gz
        --test-data-file analysis/test_dataset_definition_flu_rsv.py
        --
        --start_date 2022-09-01
      outputs:
        highly_sensitive:
          population: output/dataset_flu_rsv_2022.csv.gz

  generate_dataset_flu_rsv_2023:
      run: >
        ehrql:v1 generate-dataset analysis/dataset_definition_flu_rsv.py 
        --output output/dataset_flu_rsv_2023.csv.gz
        --test-data-file analysis/test_dataset_definition_flu_rsv.py
        --
        --start_date 2023-09-01
      outputs:
        highly_sensitive:
          population: output/dataset_flu_rsv_2023.csv.gz

  generate_dataset_flu_rsv_2024:
      run: >
        ehrql:v1 generate-dataset analysis/dataset_definition_flu_rsv.py 
        --output output/dataset_flu_rsv_2024.csv.gz
        --test-data-file analysis/test_dataset_definition_flu_rsv.py
        --
        --start_date 2024-09-01
      outputs:
        highly_sensitive:
          population: output/dataset_flu_rsv_2024.csv.gz

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:30:36

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
winter_pressures_inequalities
Requested by
Ruth Costello
Branch
main
Force run dependencies
No
Git commit hash
60dcde9
Requested actions
  • generate_dataset_covid_2021

Code comparison

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