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Job request: 11954

Organisation:
ISARIC
Workspace:
hdruk-os-covid-paeds
ID:
2msjbczyjsxykx7p
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher James Farrell requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    count_regression_admissions_03_diseases_of_the_blood_negative_binomial
    Status:
    Failed
    Job identifier:
    sd2hrupqxw5qjewf
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_admissions_03_diseases_of_the_blood.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_admissions_03_diseases_of_the_blood.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_admissions_03_diseases_of_the_blood.jpeg
  • Action:
    count_regression_admissions_05_mental_and_behavioural_disorders_negative_binomial
    Status:
    Failed
    Job identifier:
    x6b3yzcdvpnmiqi6
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    count_regression_outpatient_mental_health_negative_binomial
    Status:
    Failed
    Job identifier:
    4gk6aqmwixqo7iii
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_outpatient_mental_health.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_outpatient_mental_health.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_outpatient_mental_health.jpeg
  • Action:
    count_regression_outpatient_infectious_disease_negative_binomial
    Status:
    Failed
    Job identifier:
    ajj5qc6k642wq4ke
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_outpatient_infectious_disease.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_outpatient_infectious_disease.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_outpatient_infectious_disease.jpeg
  • Action:
    count_regression_beddays_all_negative_binomial
    Status:
    Failed
    Job identifier:
    zzlrcppk3xcdedx4
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_beddays_all.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_beddays_all.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_beddays_all.jpeg
  • Action:
    count_regression_gp_cardiovascular_system_negative_binomial
    Status:
    Failed
    Job identifier:
    ef3samxvacgutocy
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_gp_cardiovascular_system.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_gp_cardiovascular_system.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_gp_cardiovascular_system.jpeg
  • Action:
    count_regression_gp_all_negative_binomial
    Status:
    Failed
    Job identifier:
    xjkkzg5amvldgm2i
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    count_regression_gp_self_harm_negative_binomial
    Status:
    Failed
    Job identifier:
    pmps7v5mjs47uukx
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_gp_self_harm.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_gp_self_harm.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_gp_self_harm.jpeg
  • Action:
    count_regression_gp_infectious_disease_negative_binomial
    Status:
    Failed
    Job identifier:
    rcbbgwxnss2kyaoq
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    count_regression_beddays_04_endocrine_nutritional_and_metabolic_negative_binomial
    Status:
    Failed
    Job identifier:
    gojq7tighpuxukiq
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_beddays_04_endocrine_nutritional_and_metabolic.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_beddays_04_endocrine_nutritional_and_metabolic.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_beddays_04_endocrine_nutritional_and_metabolic.jpeg
  • Action:
    count_regression_gp_genitourinary_system_negative_binomial
    Status:
    Failed
    Job identifier:
    lbvf3isvs3zyfk24
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_gp_genitourinary_system.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_gp_genitourinary_system.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_gp_genitourinary_system.jpeg
  • Action:
    count_regression_beddays_03_diseases_of_the_blood_negative_binomial
    Status:
    Failed
    Job identifier:
    nimwhabegswlrq6i
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_beddays_03_diseases_of_the_blood.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_beddays_03_diseases_of_the_blood.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_beddays_03_diseases_of_the_blood.jpeg
  • Action:
    count_regression_beddays_14_genitourinary_system_negative_binomial
    Status:
    Failed
    Job identifier:
    gpe4ugpq774fzrmk
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_beddays_14_genitourinary_system.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_beddays_14_genitourinary_system.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_beddays_14_genitourinary_system.jpeg
  • Action:
    count_regression_admissions_02_neoplasms_negative_binomial
    Status:
    Failed
    Job identifier:
    pkmsn6v7vy2iydcc
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_admissions_02_neoplasms.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_admissions_02_neoplasms.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_admissions_02_neoplasms.jpeg
  • Action:
    count_regression_outpatient_gastrointestinal_negative_binomial
    Status:
    Failed
    Job identifier:
    c2ubpbeqaliy5ovp
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_outpatient_gastrointestinal.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_outpatient_gastrointestinal.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_outpatient_gastrointestinal.jpeg
  • Action:
    count_regression_outpatient_oncology_negative_binomial
    Status:
    Failed
    Job identifier:
    u7gtf3iaapa4x4na
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_outpatient_oncology.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_outpatient_oncology.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_outpatient_oncology.jpeg
  • Action:
    count_regression_gp_digestive_system_negative_binomial
    Status:
    Failed
    Job identifier:
    mcszd2k6gca2xgzt
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_gp_digestive_system.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_gp_digestive_system.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_gp_digestive_system.jpeg
  • Action:
    count_regression_admissions_04_endocrine_nutritional_and_metabolic_negative_binomial
    Status:
    Failed
    Job identifier:
    27bgbn5ab2zoziko
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_admissions_04_endocrine_nutritional_and_metabolic.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_admissions_04_endocrine_nutritional_and_metabolic.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_admissions_04_endocrine_nutritional_and_metabolic.jpeg
  • Action:
    count_regression_outpatient_renal_negative_binomial
    Status:
    Failed
    Job identifier:
    au5eotwfzmmmgwar
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_outpatient_renal.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_outpatient_renal.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_outpatient_renal.jpeg
  • Action:
    count_regression_outpatient_endocrinology_negative_binomial
    Status:
    Failed
    Job identifier:
    qqfi53cqkls66446
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_outpatient_endocrinology.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_outpatient_endocrinology.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_outpatient_endocrinology.jpeg
  • Action:
    count_regression_admissions_11_digestive_system_negative_binomial
    Status:
    Failed
    Job identifier:
    6dz4i5a5twlrcttf
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_admissions_11_digestive_system.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_admissions_11_digestive_system.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_admissions_11_digestive_system.jpeg
  • Action:
    count_regression_admissions_23_self_harm_and_poisoning_by_drugs_negative_binomial
    Status:
    Failed
    Job identifier:
    m6mnrhyp5gitryud
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_admissions_23_self_harm_and_poisoning_by_drugs.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_admissions_23_self_harm_and_poisoning_by_drugs.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_admissions_23_self_harm_and_poisoning_by_drugs.jpeg
  • Action:
    count_regression_outpatient_haematology_negative_binomial
    Status:
    Failed
    Job identifier:
    xtxvguysxqv5bfev
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_outpatient_haematology.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_outpatient_haematology.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_outpatient_haematology.jpeg
  • Action:
    count_regression_admissions_all_negative_binomial
    Status:
    Failed
    Job identifier:
    zdse24cd7olg2uxy
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_admissions_all.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_admissions_all.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_admissions_all.jpeg
  • Action:
    count_regression_admissions_01_infectious_and_parasitic_diseases_negative_binomial
    Status:
    Failed
    Job identifier:
    qz46m22qufzdp5rp
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    count_regression_gp_mental_disorder_negative_binomial
    Status:
    Failed
    Job identifier:
    7mkkbnib6ad6ncwa
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_gp_mental_disorder.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_gp_mental_disorder.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_gp_mental_disorder.jpeg
  • Action:
    count_regression_outpatient_cardiology_negative_binomial
    Status:
    Failed
    Job identifier:
    w52qzxekoavxgyek
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_outpatient_cardiology.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_outpatient_cardiology.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_outpatient_cardiology.jpeg
  • Action:
    count_regression_outpatient_all_negative_binomial
    Status:
    Failed
    Job identifier:
    loib36jqo6uy7y5l
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    count_regression_gp_endocrine_system_negative_binomial
    Status:
    Failed
    Job identifier:
    tuyo2peodjmmxhhh
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    count_regression_beddays_05_mental_and_behavioural_disorders_negative_binomial
    Status:
    Failed
    Job identifier:
    jduuqkjnc6hbwzg5
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_beddays_05_mental_and_behavioural_disorders.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_beddays_05_mental_and_behavioural_disorders.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_beddays_05_mental_and_behavioural_disorders.jpeg
  • Action:
    count_regression_admissions_10_respiratory_system_negative_binomial
    Status:
    Failed
    Job identifier:
    w5cnnklovrndysni
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    count_regression_beddays_10_respiratory_system_negative_binomial
    Status:
    Failed
    Job identifier:
    u7dpyyiaqn325zon
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_beddays_10_respiratory_system.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_beddays_10_respiratory_system.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_beddays_10_respiratory_system.jpeg
  • Action:
    count_regression_beddays_01_infectious_and_parasitic_diseases_negative_binomial
    Status:
    Failed
    Job identifier:
    mn5pj4hfkn7fie5k
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_beddays_01_infectious_and_parasitic_diseases.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_beddays_01_infectious_and_parasitic_diseases.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_beddays_01_infectious_and_parasitic_diseases.jpeg
  • Action:
    count_regression_beddays_23_self_harm_and_poisoning_by_drugs_negative_binomial
    Status:
    Failed
    Job identifier:
    dyuolfjaa2yhff3n
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    count_regression_admissions_09_circulatory_system_negative_binomial
    Status:
    Failed
    Job identifier:
    esgctdta556cqme3
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_admissions_09_circulatory_system.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_admissions_09_circulatory_system.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_admissions_09_circulatory_system.jpeg
  • Action:
    count_regression_beddays_11_digestive_system_negative_binomial
    Status:
    Failed
    Job identifier:
    q43jkaebwqqqo57l
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    count_regression_beddays_02_neoplasms_negative_binomial
    Status:
    Failed
    Job identifier:
    3g2iw3gbbqungi3s
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_beddays_02_neoplasms.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_beddays_02_neoplasms.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_beddays_02_neoplasms.jpeg
  • Action:
    count_regression_outpatient_respiratory_negative_binomial
    Status:
    Failed
    Job identifier:
    koq5mb4h5yyd3qom
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_outpatient_respiratory.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_outpatient_respiratory.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_outpatient_respiratory.jpeg
  • Action:
    count_regression_beddays_09_circulatory_system_negative_binomial
    Status:
    Failed
    Job identifier:
    pm2h2jouceucxtch
    Error:
    No outputs found matching patterns: - output/descriptives/matched_cohort/negative_binomial/tables/coeff_beddays_09_circulatory_system.csv - output/descriptives/matched_cohort/negative_binomial/tables/stats_beddays_09_circulatory_system.csv - output/descriptives/matched_cohort/negative_binomial/plots/rrplot_beddays_09_circulatory_system.jpeg
  • Action:
    count_regression_gp_neoplastic_disease_negative_binomial
    Status:
    Failed
    Job identifier:
    rzk3phhqvq4yc2qy
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    count_regression_gp_respiratory_system_negative_binomial
    Status:
    Failed
    Job identifier:
    hfd45jzpsck7vpic
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    count_regression_gp_cellular_component_of_blood_negative_binomial
    Status:
    Failed
    Job identifier:
    urpztpc5cp7svspy
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    count_regression_admissions_14_genitourinary_system_negative_binomial
    Status:
    Failed
    Job identifier:
    nxezktn5fmsu44l6
    Error:
    cancelled_by_user: Cancelled by user

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 04:48:01

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
hdruk-os-covid-paeds
Requested by
James Farrell
Branch
main
Force run dependencies
No
Git commit hash
1c1e304
Requested actions
  • count_regression_admissions_all_negative_binomial
  • count_regression_admissions_01_infectious_and_parasitic_diseases_negative_binomial
  • count_regression_admissions_02_neoplasms_negative_binomial
  • count_regression_admissions_03_diseases_of_the_blood_negative_binomial
  • count_regression_admissions_04_endocrine_nutritional_and_metabolic_negative_binomial
  • count_regression_admissions_05_mental_and_behavioural_disorders_negative_binomial
  • count_regression_admissions_09_circulatory_system_negative_binomial
  • count_regression_admissions_10_respiratory_system_negative_binomial
  • count_regression_admissions_11_digestive_system_negative_binomial
  • count_regression_admissions_14_genitourinary_system_negative_binomial
  • count_regression_admissions_23_self_harm_and_poisoning_by_drugs_negative_binomial
  • count_regression_beddays_all_negative_binomial
  • count_regression_beddays_01_infectious_and_parasitic_diseases_negative_binomial
  • count_regression_beddays_02_neoplasms_negative_binomial
  • count_regression_beddays_03_diseases_of_the_blood_negative_binomial
  • count_regression_beddays_04_endocrine_nutritional_and_metabolic_negative_binomial
  • count_regression_beddays_05_mental_and_behavioural_disorders_negative_binomial
  • count_regression_beddays_09_circulatory_system_negative_binomial
  • count_regression_beddays_10_respiratory_system_negative_binomial
  • count_regression_beddays_11_digestive_system_negative_binomial
  • count_regression_beddays_14_genitourinary_system_negative_binomial
  • count_regression_beddays_23_self_harm_and_poisoning_by_drugs_negative_binomial
  • count_regression_outpatient_all_negative_binomial
  • count_regression_outpatient_infectious_disease_negative_binomial
  • count_regression_outpatient_oncology_negative_binomial
  • count_regression_outpatient_haematology_negative_binomial
  • count_regression_outpatient_endocrinology_negative_binomial
  • count_regression_outpatient_mental_health_negative_binomial
  • count_regression_outpatient_cardiology_negative_binomial
  • count_regression_outpatient_respiratory_negative_binomial
  • count_regression_outpatient_gastrointestinal_negative_binomial
  • count_regression_outpatient_renal_negative_binomial
  • count_regression_gp_all_negative_binomial
  • count_regression_gp_infectious_disease_negative_binomial
  • count_regression_gp_neoplastic_disease_negative_binomial
  • count_regression_gp_cellular_component_of_blood_negative_binomial
  • count_regression_gp_endocrine_system_negative_binomial
  • count_regression_gp_mental_disorder_negative_binomial
  • count_regression_gp_cardiovascular_system_negative_binomial
  • count_regression_gp_respiratory_system_negative_binomial
  • count_regression_gp_digestive_system_negative_binomial
  • count_regression_gp_genitourinary_system_negative_binomial
  • count_regression_gp_self_harm_negative_binomial

Code comparison

Compare the code used in this job request