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Job request: 12606

Organisation:
ISARIC
Workspace:
hdruk-os-covid-paeds
ID:
4mer7wojndoa2tz7
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher James Farrell requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_positive_cohort
    Status:
    Status: Succeeded
    Job identifier:
    bau3qwcjrpxca3vn
  • Action:
    lcmm_data_prep
    Status:
    Status: Succeeded
    Job identifier:
    sgng4bn6r2bkdjr6
  • Action:
    lcmm_run_model_1
    Status:
    Status: Failed
    Job identifier:
    fbchzpikcxvkr5em
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lcmm_run_model_4
    Status:
    Status: Failed
    Job identifier:
    tyvxr72uktfw2lm2
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_3
    Status:
    Status: Failed
    Job identifier:
    jyrni5eor5yijn5l
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_5
    Status:
    Status: Failed
    Job identifier:
    niyuif5q3l6t4lf6
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_4
    Status:
    Status: Failed
    Job identifier:
    ujxshqcsk36xbsjg
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_2
    Status:
    Status: Failed
    Job identifier:
    25ms7m7i6fytt652
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_run_model_2
    Status:
    Status: Failed
    Job identifier:
    paeswipiswgxgqcv
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_run_model_5
    Status:
    Status: Failed
    Job identifier:
    gz4f56lc32qmscxv
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_1
    Status:
    Status: Failed
    Job identifier:
    nfnxgqckjk6h7orl
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_model_selection
    Status:
    Status: Failed
    Job identifier:
    zl7lzeebctatioqz
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_run_model_3
    Status:
    Status: Failed
    Job identifier:
    dkret2rwe6eualeh
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 100:50:03

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
hdruk-os-covid-paeds
Requested by
James Farrell
Branch
main
Force run dependencies
No
Git commit hash
537a23e
Requested actions
  • generate_positive_cohort
  • lcmm_data_prep
  • lcmm_run_model_1
  • lcmm_run_model_2
  • lcmm_run_model_3
  • lcmm_run_model_4
  • lcmm_run_model_5
  • lcmm_model_selection
  • lcmm_results_1
  • lcmm_results_2
  • lcmm_results_3
  • lcmm_results_4
  • lcmm_results_5

Code comparison

Compare the code used in this job request