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Job request: 13536

Organisation:
ISARIC
Workspace:
hdruk-os-covid-paeds
ID:
ju7kaggzx2zyty3i
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher James Farrell requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_positive_cohort
    Status:
    Succeeded
    Job identifier:
    agyygbmg7obozeu3
  • Action:
    summarise_positive_cohort
    Status:
    Succeeded
    Job identifier:
    riiusw3ehlqfbepn
  • Action:
    lcmm_data_prep
    Status:
    Succeeded
    Job identifier:
    vlxwvu7cvytuvnoa
  • Action:
    lcmm_run_model_1_beddays
    Status:
    Succeeded
    Job identifier:
    5iafrg5vlwnp2knv
  • Action:
    lcmm_run_model_5_beddays
    Status:
    Failed
    Job identifier:
    ktn4iqicxnnc6mcm
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lcmm_run_model_2_beddays
    Status:
    Succeeded
    Job identifier:
    4ae56wh5naoenfo4
  • Action:
    lcmm_run_model_3_beddays
    Status:
    Succeeded
    Job identifier:
    rfoakyedbdxjqmb3
  • Action:
    lcmm_run_model_4_beddays
    Status:
    Succeeded
    Job identifier:
    axqd3a467xvl64pt
  • Action:
    lcmm_results_1_beddays
    Status:
    Succeeded
    Job identifier:
    xdmhmb5o77gxt6lj
  • Action:
    lcmm_results_2_beddays
    Status:
    Succeeded
    Job identifier:
    5hr3kvoofk42rizd
  • Action:
    lcmm_results_3_beddays
    Status:
    Succeeded
    Job identifier:
    v6ha2xac3kzxqo3w
  • Action:
    lcmm_results_4_beddays
    Status:
    Succeeded
    Job identifier:
    cckooavwsbauvv5n
  • Action:
    lcmm_model_selection_beddays
    Status:
    Failed
    Job identifier:
    dr36wmnw42ojss2j
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_5_beddays
    Status:
    Failed
    Job identifier:
    arbndvp4mu6cbdur
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 22:54:14

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
hdruk-os-covid-paeds
Requested by
James Farrell
Branch
main
Force run dependencies
No
Git commit hash
ad519ce
Requested actions
  • generate_positive_cohort
  • summarise_positive_cohort
  • lcmm_data_prep
  • lcmm_run_model_1_beddays
  • lcmm_run_model_2_beddays
  • lcmm_run_model_3_beddays
  • lcmm_run_model_4_beddays
  • lcmm_run_model_5_beddays
  • lcmm_model_selection_beddays
  • lcmm_results_1_beddays
  • lcmm_results_2_beddays
  • lcmm_results_3_beddays
  • lcmm_results_4_beddays
  • lcmm_results_5_beddays

Code comparison

Compare the code used in this job request