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Job request: 13541

Organisation:
ISARIC
Workspace:
hdruk-os-covid-paeds
ID:
ja3p6lagjg7yzhlp
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher James Farrell requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_positive_cohort
    Status:
    Succeeded
    Job identifier:
    zapxyj2n3sj2ggpk
  • Action:
    summarise_positive_cohort
    Status:
    Succeeded
    Job identifier:
    2bdfyy5brfksu6ah
  • Action:
    lcmm_data_prep
    Status:
    Succeeded
    Job identifier:
    qxnsrg2maf4lvzqy
  • Action:
    lcmm_run_model_1_beddays
    Status:
    Succeeded
    Job identifier:
    4p7tqwuuuxpblelu
  • Action:
    lcmm_run_model_1_outpatient
    Status:
    Succeeded
    Job identifier:
    svk54omrr3mifdte
  • Action:
    lcmm_run_model_1_gp
    Status:
    Failed
    Job identifier:
    k6tebr7ynl35e4i6
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lcmm_run_model_5_beddays
    Status:
    Succeeded
    Job identifier:
    iuxeb7tqsqlf6vub
  • Action:
    lcmm_run_model_4_beddays
    Status:
    Succeeded
    Job identifier:
    rgqzpl35lpl4l6mb
  • Action:
    lcmm_results_1_beddays
    Status:
    Succeeded
    Job identifier:
    fll6drbzt62vbmpe
  • Action:
    lcmm_run_model_3_beddays
    Status:
    Succeeded
    Job identifier:
    c7edl5ihnr4kqiyp
  • Action:
    lcmm_run_model_2_beddays
    Status:
    Succeeded
    Job identifier:
    tqajerqjdxusa74c
  • Action:
    lcmm_results_2_beddays
    Status:
    Succeeded
    Job identifier:
    yerep24s7662ujgy
  • Action:
    lcmm_results_3_beddays
    Status:
    Succeeded
    Job identifier:
    ebkkaw7d3xyzjcta
  • Action:
    lcmm_results_4_beddays
    Status:
    Succeeded
    Job identifier:
    3msatsanlti7yzuv
  • Action:
    lcmm_model_selection_beddays
    Status:
    Succeeded
    Job identifier:
    5bdua3ave6nkn5np
  • Action:
    lcmm_results_5_beddays
    Status:
    Succeeded
    Job identifier:
    tmnwtnhp7re7exve
  • Action:
    lcmm_run_model_5_outpatient
    Status:
    Succeeded
    Job identifier:
    nun2dinq5o5ab3me
  • Action:
    lcmm_results_1_outpatient
    Status:
    Succeeded
    Job identifier:
    7ykacgzqfugpxmkr
  • Action:
    lcmm_run_model_2_outpatient
    Status:
    Succeeded
    Job identifier:
    25ws3w2nklabhoel
  • Action:
    lcmm_run_model_3_outpatient
    Status:
    Succeeded
    Job identifier:
    sor5k2yfo5k4eqwk
  • Action:
    lcmm_run_model_4_outpatient
    Status:
    Succeeded
    Job identifier:
    q5g2s6pcc6f2noyu
  • Action:
    lcmm_results_2_outpatient
    Status:
    Failed
    Job identifier:
    734lqmlhbozazvsi
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    lcmm_results_3_outpatient
    Status:
    Failed
    Job identifier:
    2knedz5s7gzocubt
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    lcmm_results_4_outpatient
    Status:
    Failed
    Job identifier:
    y3ctkqkzmfwul3zs
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    lcmm_results_5_outpatient
    Status:
    Failed
    Job identifier:
    5j7dfjsgv7gyo42a
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    lcmm_model_selection_outpatient
    Status:
    Succeeded
    Job identifier:
    e6em6k7idvqqanjd
  • Action:
    lcmm_run_model_4_gp
    Status:
    Failed
    Job identifier:
    j66eql4c6awtvoey
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_1_gp
    Status:
    Failed
    Job identifier:
    ihflfdg7y53etqwm
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_2_gp
    Status:
    Failed
    Job identifier:
    t5t2fkkvf5mzbk3r
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_run_model_3_gp
    Status:
    Failed
    Job identifier:
    ovebsvouhiuayyyl
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_run_model_2_gp
    Status:
    Failed
    Job identifier:
    m47s274zobbc3alc
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_run_model_5_gp
    Status:
    Failed
    Job identifier:
    2sed6frqia2yiisr
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_model_selection_gp
    Status:
    Failed
    Job identifier:
    zlhuba6rdjd2y2lm
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_4_gp
    Status:
    Failed
    Job identifier:
    jaqhzj3xs5gehxm5
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_5_gp
    Status:
    Failed
    Job identifier:
    e2n45zkithhloowu
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_3_gp
    Status:
    Failed
    Job identifier:
    hkt42c26eocw3c25
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 118:49:57

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
hdruk-os-covid-paeds
Requested by
James Farrell
Branch
main
Force run dependencies
No
Git commit hash
4bc0cd0
Requested actions
  • generate_positive_cohort
  • summarise_positive_cohort
  • lcmm_data_prep
  • lcmm_run_model_1_beddays
  • lcmm_run_model_2_beddays
  • lcmm_run_model_3_beddays
  • lcmm_run_model_4_beddays
  • lcmm_run_model_5_beddays
  • lcmm_model_selection_beddays
  • lcmm_results_1_beddays
  • lcmm_results_2_beddays
  • lcmm_results_3_beddays
  • lcmm_results_4_beddays
  • lcmm_results_5_beddays
  • lcmm_run_model_1_outpatient
  • lcmm_run_model_2_outpatient
  • lcmm_run_model_3_outpatient
  • lcmm_run_model_4_outpatient
  • lcmm_run_model_5_outpatient
  • lcmm_model_selection_outpatient
  • lcmm_results_1_outpatient
  • lcmm_results_2_outpatient
  • lcmm_results_3_outpatient
  • lcmm_results_4_outpatient
  • lcmm_results_5_outpatient
  • lcmm_run_model_1_gp
  • lcmm_run_model_2_gp
  • lcmm_run_model_3_gp
  • lcmm_run_model_4_gp
  • lcmm_run_model_5_gp
  • lcmm_model_selection_gp
  • lcmm_results_1_gp
  • lcmm_results_2_gp
  • lcmm_results_3_gp
  • lcmm_results_4_gp
  • lcmm_results_5_gp

Code comparison

Compare the code used in this job request