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Job request: 13673

Organisation:
ISARIC
Workspace:
hdruk-os-covid-paeds
ID:
aghuit5s3gxfahnc
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher James Farrell requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_positive_cohort
    Status:
    Succeeded
    Job identifier:
    ovqssjd2yl4hmf2q
  • Action:
    lcmm_data_prep
    Status:
    Succeeded
    Job identifier:
    xdj2eh7alzevnstc
  • Action:
    summarise_positive_cohort
    Status:
    Succeeded
    Job identifier:
    nkzofd5kk55cp5dz
  • Action:
    dtw_data_prep
    Status:
    Succeeded
    Job identifier:
    rm64qpuiznu7bsip
  • Action:
    lcmm_run_model_1_gp
    Status:
    Succeeded
    Job identifier:
    2vlvjs55tt3vpax3
  • Action:
    lcmm_run_model_1_outpatient
    Status:
    Succeeded
    Job identifier:
    rrcvbcwwnqrcmgzo
  • Action:
    lcmm_run_model_1_beddays
    Status:
    Succeeded
    Job identifier:
    qc63rt5xvxylmahl
  • Action:
    dtw_run_model_4
    Status:
    Succeeded
    Job identifier:
    m7q4crvdaxkwn6d3
  • Action:
    dtw_run_model_6
    Status:
    Succeeded
    Job identifier:
    hf6bxnt54afd3vyu
  • Action:
    dtw_run_model_5
    Status:
    Succeeded
    Job identifier:
    mie6nyjphoel7y4k
  • Action:
    dtw_run_model_7
    Status:
    Succeeded
    Job identifier:
    nh3pv3hznx6j46un
  • Action:
    dtw_run_model_8
    Status:
    Succeeded
    Job identifier:
    45gdt27pefhdmsqv
  • Action:
    lcmm_results_1_outpatient
    Status:
    Succeeded
    Job identifier:
    bykern67fqcwmby3
  • Action:
    lcmm_run_model_2_outpatient
    Status:
    Succeeded
    Job identifier:
    qtmjpibxhlb4h3gi
  • Action:
    lcmm_run_model_5_gp
    Status:
    Succeeded
    Job identifier:
    fca5is5llxvsi7k3
  • Action:
    lcmm_run_model_5_outpatient
    Status:
    Succeeded
    Job identifier:
    oh6xdg4uhcnlndol
  • Action:
    lcmm_run_model_3_gp
    Status:
    Succeeded
    Job identifier:
    ruymqknqyb7sy4ev
  • Action:
    lcmm_run_model_3_outpatient
    Status:
    Succeeded
    Job identifier:
    ybtpjvpxox6lhnd4
  • Action:
    lcmm_run_model_2_gp
    Status:
    Succeeded
    Job identifier:
    4ajvrphtlpth5tnn
  • Action:
    lcmm_results_1_gp
    Status:
    Succeeded
    Job identifier:
    zumnxvlwhjyhqygq
  • Action:
    lcmm_run_model_4_outpatient
    Status:
    Succeeded
    Job identifier:
    gzptijkyqlrfszp7
  • Action:
    lcmm_run_model_4_gp
    Status:
    Succeeded
    Job identifier:
    53orydwmoir7uuux
  • Action:
    lcmm_run_model_3_beddays
    Status:
    Succeeded
    Job identifier:
    7xgo45qtjzipnqnc
  • Action:
    lcmm_run_model_5_beddays
    Status:
    Succeeded
    Job identifier:
    ispvjhxrd6r6d2g2
  • Action:
    lcmm_results_5_gp
    Status:
    Failed
    Job identifier:
    5hi54ryos57nnxrb
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    lcmm_run_model_2_beddays
    Status:
    Succeeded
    Job identifier:
    caybkk5nsne4ji3i
  • Action:
    lcmm_run_model_4_beddays
    Status:
    Succeeded
    Job identifier:
    ivhgnij5lre5p6by
  • Action:
    lcmm_results_1_beddays
    Status:
    Succeeded
    Job identifier:
    ghluthy3oxv6acvm
  • Action:
    lcmm_model_selection_gp
    Status:
    Succeeded
    Job identifier:
    bhh5xmoztbseb6pj
  • Action:
    lcmm_results_5_outpatient
    Status:
    Failed
    Job identifier:
    7dma5uot7g722law
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    lcmm_results_4_outpatient
    Status:
    Failed
    Job identifier:
    hn42bdh65mxpjpgv
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    lcmm_model_selection_outpatient
    Status:
    Succeeded
    Job identifier:
    ufdq2pwixnfl2hqy
  • Action:
    lcmm_results_3_outpatient
    Status:
    Failed
    Job identifier:
    5ypazyuhxtji32ut
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    lcmm_results_4_gp
    Status:
    Failed
    Job identifier:
    wdsfohjiaalyh7uc
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    lcmm_results_3_beddays
    Status:
    Failed
    Job identifier:
    6x6k2r2extzecrvk
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    lcmm_results_2_gp
    Status:
    Failed
    Job identifier:
    rfcxafo6w3vu7gas
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    lcmm_results_2_outpatient
    Status:
    Failed
    Job identifier:
    ab5lbrkpmzfbuqm4
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    lcmm_results_3_gp
    Status:
    Failed
    Job identifier:
    7evpdbxfbqode7b3
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    lcmm_results_2_beddays
    Status:
    Failed
    Job identifier:
    zcp6cw74r6letxna
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    lcmm_model_selection_beddays
    Status:
    Succeeded
    Job identifier:
    kpkibalpar5sf5cn
  • Action:
    lcmm_results_5_beddays
    Status:
    Failed
    Job identifier:
    sjcmc7gq5i3rkwp6
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    lcmm_results_4_beddays
    Status:
    Failed
    Job identifier:
    i3iyyciwgfqcjoru
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    dtw_results_4
    Status:
    Succeeded
    Job identifier:
    hvw4lkl5wrgz2y6p
  • Action:
    dtw_results_7
    Status:
    Succeeded
    Job identifier:
    xhhs6lbq4kxwcgxj
  • Action:
    dtw_results_6
    Status:
    Succeeded
    Job identifier:
    ogrpvzmjarxrzwhe
  • Action:
    dtw_selection
    Status:
    Succeeded
    Job identifier:
    xsawu54ukbdrirtp
  • Action:
    dtw_results_5
    Status:
    Succeeded
    Job identifier:
    wotie26vuk4g3tlg
  • Action:
    dtw_results_8
    Status:
    Succeeded
    Job identifier:
    kx5h2mpkmlcwjjqw

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 07:19:07

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
hdruk-os-covid-paeds
Requested by
James Farrell
Branch
main
Force run dependencies
No
Git commit hash
b4046a1
Requested actions
  • generate_positive_cohort
  • summarise_positive_cohort
  • dtw_data_prep
  • dtw_run_model_4
  • dtw_run_model_5
  • dtw_run_model_6
  • dtw_run_model_7
  • dtw_run_model_8
  • dtw_selection
  • dtw_results_4
  • dtw_results_5
  • dtw_results_6
  • dtw_results_7
  • dtw_results_8
  • lcmm_data_prep
  • lcmm_run_model_1_beddays
  • lcmm_run_model_2_beddays
  • lcmm_run_model_3_beddays
  • lcmm_run_model_4_beddays
  • lcmm_run_model_5_beddays
  • lcmm_model_selection_beddays
  • lcmm_results_1_beddays
  • lcmm_results_2_beddays
  • lcmm_results_3_beddays
  • lcmm_results_4_beddays
  • lcmm_results_5_beddays
  • lcmm_run_model_1_outpatient
  • lcmm_run_model_2_outpatient
  • lcmm_run_model_3_outpatient
  • lcmm_run_model_4_outpatient
  • lcmm_run_model_5_outpatient
  • lcmm_model_selection_outpatient
  • lcmm_results_1_outpatient
  • lcmm_results_2_outpatient
  • lcmm_results_3_outpatient
  • lcmm_results_4_outpatient
  • lcmm_results_5_outpatient
  • lcmm_run_model_1_gp
  • lcmm_run_model_2_gp
  • lcmm_run_model_3_gp
  • lcmm_run_model_4_gp
  • lcmm_run_model_5_gp
  • lcmm_model_selection_gp
  • lcmm_results_1_gp
  • lcmm_results_2_gp
  • lcmm_results_3_gp
  • lcmm_results_4_gp
  • lcmm_results_5_gp

Code comparison

Compare the code used in this job request