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Job request: 13786

Organisation:
ISARIC
Workspace:
hdruk-os-covid-paeds
ID:
ww4vsh3ghbgmgogx

This page shows the technical details of what happened when the authorised researcher James Farrell requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    generate_positive_cohort
    Status:
    Status: Succeeded
    Job identifier:
    f2xenfh6uqoaieac
  • Action:
    summarise_positive_cohort
    Status:
    Status: Succeeded
    Job identifier:
    d73a64f55pdn4czx
  • Action:
    dtw_data_prep
    Status:
    Status: Succeeded
    Job identifier:
    mtx2rgevnaip6peb
  • Action:
    lcmm_data_prep
    Status:
    Status: Succeeded
    Job identifier:
    oxu2t2dtyqe4r2yi
  • Action:
    lcmm_link_function_outpatient
    Status:
    Status: Failed
    Job identifier:
    rm36nwc2cjrnkczd
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    lcmm_link_function_beddays
    Status:
    Status: Succeeded
    Job identifier:
    etxfvukady5lqwyz
  • Action:
    lcmm_link_function_gp
    Status:
    Status: Failed
    Job identifier:
    vp2uy23aoouq7e2f
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    dtw_run_model_5
    Status:
    Status: Failed
    Job identifier:
    ifte7e2gzpln77xw
    Error:
    nonzero_exit: Job exited with an error: Ran out of memory (limit for this job was 128.00GB)
  • Action:
    dtw_run_model_6
    Status:
    Status: Failed
    Job identifier:
    vd2na6bax7niqsat
    Error:
    nonzero_exit: Job exited with an error: Ran out of memory (limit for this job was 128.00GB)
  • Action:
    dtw_run_model_7
    Status:
    Status: Failed
    Job identifier:
    tupycrqdmt4fixpy
    Error:
    nonzero_exit: Job exited with an error: Ran out of memory (limit for this job was 128.00GB)
  • Action:
    dtw_run_model_8
    Status:
    Status: Failed
    Job identifier:
    o762rvhc3hzj3j2c
    Error:
    nonzero_exit: Job exited with an error: Ran out of memory (limit for this job was 128.00GB)
  • Action:
    dtw_run_model_4
    Status:
    Status: Failed
    Job identifier:
    hfiy7lmypddzxutf
    Error:
    nonzero_exit: Job exited with an error: Ran out of memory (limit for this job was 128.00GB)
  • Action:
    dtw_results_8
    Status:
    Status: Failed
    Job identifier:
    zyf2f7wklvtvomsx
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    dtw_results_7
    Status:
    Status: Failed
    Job identifier:
    gya3nfqaywvlq625
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    dtw_selection
    Status:
    Status: Failed
    Job identifier:
    5ll6nossdjvms26l
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    dtw_results_4
    Status:
    Status: Failed
    Job identifier:
    eyoge4i3w6zeazq5
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    dtw_results_5
    Status:
    Status: Failed
    Job identifier:
    wfs5hk63ozbjhbm3
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    dtw_results_6
    Status:
    Status: Failed
    Job identifier:
    gyl56ut4uptfcuvd
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 21:40:24

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed
Backend
TPP
Requested by
James Farrell
Branch
main
Force run dependencies
No
Git commit hash
87d2ef8
Requested actions
  • generate_positive_cohort
  • summarise_positive_cohort
  • dtw_data_prep
  • dtw_run_model_4
  • dtw_run_model_5
  • dtw_run_model_6
  • dtw_run_model_7
  • dtw_run_model_8
  • dtw_selection
  • dtw_results_4
  • dtw_results_5
  • dtw_results_6
  • dtw_results_7
  • dtw_results_8
  • lcmm_data_prep
  • lcmm_link_function_beddays
  • lcmm_link_function_outpatient
  • lcmm_link_function_gp

Code comparison

Compare the code used in this Job Request