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Job request: 13802

Organisation:
ISARIC
Workspace:
hdruk-os-covid-paeds
ID:
5h2p4nov7yzyoqxm

This page shows the technical details of what happened when the authorised researcher James Farrell requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    generate_positive_cohort
    Status:
    Status: Succeeded
    Job identifier:
    gltfvevnojzk7etc
  • Action:
    summarise_positive_cohort
    Status:
    Status: Succeeded
    Job identifier:
    x4zwywwzlvmarap7
  • Action:
    lcmm_data_prep
    Status:
    Status: Succeeded
    Job identifier:
    di3aw5ofiohjj5nf
  • Action:
    lcmm_link_function_outpatient
    Status:
    Status: Succeeded
    Job identifier:
    vhbz2iq5j637yskq
  • Action:
    dtw_data_prep
    Status:
    Status: Succeeded
    Job identifier:
    337oovtpk2wn6of3
  • Action:
    lcmm_run_model_1_outpatient
    Status:
    Status: Succeeded
    Job identifier:
    b4xgxznejxpyxstc
  • Action:
    dtw_run_model_4
    Status:
    Status: Succeeded
    Job identifier:
    qwbu6cxthwmioivk
  • Action:
    dtw_run_model_7
    Status:
    Status: Succeeded
    Job identifier:
    meeusmm6koiqspso
  • Action:
    dtw_results_4
    Status:
    Status: Succeeded
    Job identifier:
    hvpk75sdazs2j2co
  • Action:
    lcmm_link_function_gp
    Status:
    Status: Succeeded
    Job identifier:
    c22zthnhv5py7g5n
  • Action:
    lcmm_run_model_1_gp
    Status:
    Status: Failed
    Job identifier:
    r56matjfoc4s534z
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    dtw_run_model_8
    Status:
    Status: Succeeded
    Job identifier:
    x6jm5l3ppihgve3a
  • Action:
    lcmm_link_function_beddays
    Status:
    Status: Succeeded
    Job identifier:
    cy3fcrlul77smon3
  • Action:
    lcmm_run_model_1_beddays
    Status:
    Status: Succeeded
    Job identifier:
    3fghhrntifbmbhxt
  • Action:
    dtw_run_model_5
    Status:
    Status: Succeeded
    Job identifier:
    c2fb2vtv3jdqgpww
  • Action:
    dtw_run_model_6
    Status:
    Status: Succeeded
    Job identifier:
    ant2yrhphgvdc5d3
  • Action:
    lcmm_run_model_5_beddays
    Status:
    Status: Failed
    Job identifier:
    zhhqr23hlbqzkvsc
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lcmm_results_1_beddays
    Status:
    Status: Succeeded
    Job identifier:
    j2ncnkhmym3jmp2o
  • Action:
    dtw_results_5
    Status:
    Status: Succeeded
    Job identifier:
    2tbs5ma67xohjxuy
  • Action:
    dtw_results_6
    Status:
    Status: Succeeded
    Job identifier:
    ig4aidudzqdt436x
  • Action:
    lcmm_run_model_2_beddays
    Status:
    Status: Succeeded
    Job identifier:
    kf4zd4fv4zfxywvj
  • Action:
    lcmm_run_model_4_beddays
    Status:
    Status: Failed
    Job identifier:
    ezv2yhg45k5xnrxm
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    lcmm_run_model_5_outpatient
    Status:
    Status: Failed
    Job identifier:
    2tfv3tswafbuzp75
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    lcmm_results_2_beddays
    Status:
    Status: Succeeded
    Job identifier:
    zwrrprcqhkludvrp
  • Action:
    dtw_results_8
    Status:
    Status: Succeeded
    Job identifier:
    ltmbbpqx5vavauqf
  • Action:
    lcmm_results_1_outpatient
    Status:
    Status: Failed
    Job identifier:
    igsobz7lnr3633qs
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    lcmm_run_model_3_beddays
    Status:
    Status: Failed
    Job identifier:
    bsy67c2qdh4gbz5n
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    dtw_selection
    Status:
    Status: Succeeded
    Job identifier:
    juzgmdcf6y4766f7
  • Action:
    lcmm_run_model_2_outpatient
    Status:
    Status: Failed
    Job identifier:
    qjkrrfdm7fu3eoaj
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    dtw_results_7
    Status:
    Status: Succeeded
    Job identifier:
    onqf4jtuld74jlqn
  • Action:
    lcmm_run_model_3_outpatient
    Status:
    Status: Failed
    Job identifier:
    tin34ulrzfwg5gaa
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    lcmm_run_model_4_outpatient
    Status:
    Status: Failed
    Job identifier:
    hepbjzpugkkb5eit
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    lcmm_results_4_gp
    Status:
    Status: Failed
    Job identifier:
    7vp5rlv4etsrl2dd
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_run_model_2_gp
    Status:
    Status: Failed
    Job identifier:
    4uebtnbunsstyflv
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_run_model_3_gp
    Status:
    Status: Failed
    Job identifier:
    z363cjap7eduoqpe
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_run_model_4_gp
    Status:
    Status: Failed
    Job identifier:
    ktumhsxlowpurkxc
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_model_selection_beddays
    Status:
    Status: Failed
    Job identifier:
    yjcs2jltaxnoiug4
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_model_selection_gp
    Status:
    Status: Failed
    Job identifier:
    x4rzwuvbji4zbkp5
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_model_selection_outpatient
    Status:
    Status: Failed
    Job identifier:
    4ds2yfdvamkb5m7m
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_3_outpatient
    Status:
    Status: Failed
    Job identifier:
    dqsecorq7sk25bo3
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_4_beddays
    Status:
    Status: Failed
    Job identifier:
    qqdiinwld3pcelv4
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_4_outpatient
    Status:
    Status: Failed
    Job identifier:
    iavl3mic5rp6xxth
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_5_beddays
    Status:
    Status: Failed
    Job identifier:
    ivzm3eh3x5yxe573
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_5_outpatient
    Status:
    Status: Failed
    Job identifier:
    g4pmnodydmmmucrg
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_1_gp
    Status:
    Status: Failed
    Job identifier:
    v4cjf4wmzfu5po67
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_2_gp
    Status:
    Status: Failed
    Job identifier:
    iuuxrzrketcp2gmk
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_2_outpatient
    Status:
    Status: Failed
    Job identifier:
    vjrm3ntcvba5dp3j
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_3_beddays
    Status:
    Status: Failed
    Job identifier:
    db7re6r2vyyarljc
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_run_model_5_gp
    Status:
    Status: Failed
    Job identifier:
    72vfkvtqmwq2vbn5
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_3_gp
    Status:
    Status: Failed
    Job identifier:
    tqadecpmor7gf26f
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    lcmm_results_5_gp
    Status:
    Status: Failed
    Job identifier:
    jrnh354hfuuib3zt
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 127:42:00

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed
Backend
TPP
Requested by
James Farrell
Branch
main
Force run dependencies
No
Git commit hash
7828875
Requested actions
  • generate_positive_cohort
  • summarise_positive_cohort
  • dtw_data_prep
  • dtw_run_model_4
  • dtw_run_model_5
  • dtw_run_model_6
  • dtw_run_model_7
  • dtw_run_model_8
  • dtw_selection
  • dtw_results_4
  • dtw_results_5
  • dtw_results_6
  • dtw_results_7
  • dtw_results_8
  • lcmm_data_prep
  • lcmm_link_function_beddays
  • lcmm_link_function_outpatient
  • lcmm_link_function_gp
  • lcmm_run_model_1_beddays
  • lcmm_run_model_2_beddays
  • lcmm_run_model_3_beddays
  • lcmm_run_model_4_beddays
  • lcmm_run_model_5_beddays
  • lcmm_model_selection_beddays
  • lcmm_results_1_beddays
  • lcmm_results_2_beddays
  • lcmm_results_3_beddays
  • lcmm_results_4_beddays
  • lcmm_results_5_beddays
  • lcmm_run_model_1_outpatient
  • lcmm_run_model_2_outpatient
  • lcmm_run_model_3_outpatient
  • lcmm_run_model_4_outpatient
  • lcmm_run_model_5_outpatient
  • lcmm_model_selection_outpatient
  • lcmm_results_1_outpatient
  • lcmm_results_2_outpatient
  • lcmm_results_3_outpatient
  • lcmm_results_4_outpatient
  • lcmm_results_5_outpatient
  • lcmm_run_model_1_gp
  • lcmm_run_model_2_gp
  • lcmm_run_model_3_gp
  • lcmm_run_model_4_gp
  • lcmm_run_model_5_gp
  • lcmm_model_selection_gp
  • lcmm_results_1_gp
  • lcmm_results_2_gp
  • lcmm_results_3_gp
  • lcmm_results_4_gp
  • lcmm_results_5_gp

Code comparison

Compare the code used in this Job Request