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Job request: 14089

Organisation:
ISARIC
Workspace:
hdruk-os-covid-paeds
ID:
gwdasnske52j3yaz
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher James Farrell requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_positive_cohort
    Status:
    Succeeded
    Job identifier:
    un6qfrdvjspsmqzr
  • Action:
    dtw_data_prep
    Status:
    Succeeded
    Job identifier:
    qpb5dzl7v6tscxaw
  • Action:
    summarise_positive_cohort
    Status:
    Succeeded
    Job identifier:
    x54bbdsuigirmm6w
  • Action:
    lcmm_data_prep
    Status:
    Succeeded
    Job identifier:
    3yb3fcngliok2ok6
  • Action:
    lcmm_link_function_gp
    Status:
    Failed
    Job identifier:
    l4mnukutovd4shuu
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    lcmm_link_function_beddays
    Status:
    Succeeded
    Job identifier:
    epvjenlrrtzrvcvz
  • Action:
    lcmm_link_function_outpatient
    Status:
    Succeeded
    Job identifier:
    f4fs3phnn25l4il6
  • Action:
    lcmm_run_model_1_beddays
    Status:
    Succeeded
    Job identifier:
    uz3c4dhig2tu3nx3
  • Action:
    dtw_run_model_6
    Status:
    Succeeded
    Job identifier:
    ab6nsrzkwq4r6ku4
  • Action:
    dtw_run_model_5
    Status:
    Succeeded
    Job identifier:
    ucvbpqdsp4mnmg7k
  • Action:
    dtw_run_model_8
    Status:
    Succeeded
    Job identifier:
    3ayrazigbo6xiv2t
  • Action:
    dtw_run_model_7
    Status:
    Succeeded
    Job identifier:
    vk5ek7hj7gpgpi6r
  • Action:
    dtw_run_model_4
    Status:
    Succeeded
    Job identifier:
    uru3vxtiflpbjjs4
  • Action:
    lcmm_run_model_5_beddays
    Status:
    Succeeded
    Job identifier:
    vmr4ueahrntbtlhz
  • Action:
    lcmm_run_model_3_beddays
    Status:
    Succeeded
    Job identifier:
    n2dhxfvj2qgdcz3d
  • Action:
    lcmm_results_1_beddays
    Status:
    Failed
    Job identifier:
    uijaevwkhhkqjmzz
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    lcmm_run_model_2_beddays
    Status:
    Succeeded
    Job identifier:
    riruafdpztsurhno
  • Action:
    lcmm_run_model_4_beddays
    Status:
    Succeeded
    Job identifier:
    mfluke4fl4z2s4ag
  • Action:
    lcmm_results_4_beddays
    Status:
    Succeeded
    Job identifier:
    vhbvkoappvk6l64t
  • Action:
    lcmm_results_5_beddays
    Status:
    Succeeded
    Job identifier:
    msvz23wjc3e6qpdw
  • Action:
    lcmm_results_2_beddays
    Status:
    Succeeded
    Job identifier:
    szbkcaqxit6mpamx
  • Action:
    lcmm_results_3_beddays
    Status:
    Succeeded
    Job identifier:
    ttxpg6egihfj2clg
  • Action:
    lcmm_model_selection_beddays
    Status:
    Succeeded
    Job identifier:
    xnznb2phzuo6tnf2
  • Action:
    dtw_results_5
    Status:
    Succeeded
    Job identifier:
    lg7zqcv727edz4na
  • Action:
    dtw_results_6
    Status:
    Succeeded
    Job identifier:
    h4lq2wg4gvzcvybo
  • Action:
    dtw_results_7
    Status:
    Succeeded
    Job identifier:
    z7ljwgqmgsqqyp3q
  • Action:
    dtw_results_8
    Status:
    Succeeded
    Job identifier:
    vmevt6va567t32gp
  • Action:
    dtw_selection
    Status:
    Succeeded
    Job identifier:
    vwyop2d5tzwsyztc
  • Action:
    dtw_results_4
    Status:
    Succeeded
    Job identifier:
    bsnhgkphcmnqkt3i

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 18:48:05

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
hdruk-os-covid-paeds
Requested by
James Farrell
Branch
main
Force run dependencies
No
Git commit hash
92742e0
Requested actions
  • generate_positive_cohort
  • summarise_positive_cohort
  • dtw_data_prep
  • dtw_run_model_4
  • dtw_run_model_5
  • dtw_run_model_6
  • dtw_run_model_7
  • dtw_run_model_8
  • dtw_selection
  • dtw_results_4
  • dtw_results_5
  • dtw_results_6
  • dtw_results_7
  • dtw_results_8
  • lcmm_data_prep
  • lcmm_link_function_beddays
  • lcmm_link_function_outpatient
  • lcmm_link_function_gp
  • lcmm_run_model_1_beddays
  • lcmm_run_model_2_beddays
  • lcmm_run_model_3_beddays
  • lcmm_run_model_4_beddays
  • lcmm_run_model_5_beddays
  • lcmm_model_selection_beddays
  • lcmm_results_1_beddays
  • lcmm_results_2_beddays
  • lcmm_results_3_beddays
  • lcmm_results_4_beddays
  • lcmm_results_5_beddays

Code comparison

Compare the code used in this job request