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Job request: 12481

Organisation:
University of Bristol
Workspace:
diabetes-post-hoc-analysis
ID:
32fnh4vjagdd563q
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Kurt Taylor requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    vax_eligibility_inputs
    Status:
    Succeeded
    Job identifier:
    x2vjexdhnue6yjzs
  • Action:
    generate_study_population_prelim
    Status:
    Succeeded
    Job identifier:
    hkpya5ol4ges37gk
  • Action:
    generate_index_dates
    Status:
    Succeeded
    Job identifier:
    v3v3tndmv6egeqj6
  • Action:
    generate_study_population_vax
    Status:
    Succeeded
    Job identifier:
    lei6rjdsmxrxinmo
  • Action:
    generate_study_population_unvax
    Status:
    Succeeded
    Job identifier:
    j6hn5s34dzvakh4r
  • Action:
    generate_study_population_prevax
    Status:
    Succeeded
    Job identifier:
    s5z7cyasi3qgkuoh
  • Action:
    preprocess_data_prevax
    Status:
    Succeeded
    Job identifier:
    swplb5n3dnvmjtkn
  • Action:
    preprocess_data_unvax
    Status:
    Succeeded
    Job identifier:
    2d5hbom2s6q432sn
  • Action:
    preprocess_data_vax
    Status:
    Succeeded
    Job identifier:
    qyuqliuucn2wijlz
  • Action:
    stage1_data_cleaning_all
    Status:
    Failed
    Job identifier:
    623zahr6lvxgpkam
    Error:
    nonzero_exit: Job exited with error code 137: Ran out of memory (limit for this job was 128.00GB)
  • Action:
    stage2_missing_table1_all
    Status:
    Failed
    Job identifier:
    uxceqglz7gf2hh7f
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage3_diabetes_flow_prevax
    Status:
    Failed
    Job identifier:
    zz7lxkepf5qvfntf
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage3_diabetes_flow_vax
    Status:
    Failed
    Job identifier:
    yihyjtxewpipdnrq
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage3_diabetes_flow_unvax
    Status:
    Failed
    Job identifier:
    taus6ola7glimwpo
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage4_table_2_prevax
    Status:
    Failed
    Job identifier:
    3rbhrhzuctx4t24v
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage4_table_2_vax
    Status:
    Failed
    Job identifier:
    v3lmpvioc4rvjxsr
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage4_table_2_unvax
    Status:
    Failed
    Job identifier:
    tqpgvvvd7qdak2nl
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage4_venn_diagram_all
    Status:
    Failed
    Job identifier:
    c2u4esqx4ow5fyjd
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage1_end_date_table_prevax
    Status:
    Failed
    Job identifier:
    7g73e6ynbfisnaij
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage1_end_date_table_vax
    Status:
    Failed
    Job identifier:
    eb6kp3cysekja7jw
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage1_end_date_table_unvax
    Status:
    Failed
    Job identifier:
    htn27wv5b23mhgmq
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    generate_study_population_prevax_diabetes_analyis
    Status:
    Failed
    Job identifier:
    gsvnd4d7bgkhohym
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    generate_study_population_vax_diabetes_analyis
    Status:
    Failed
    Job identifier:
    iv7c7nyps5lupflz
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    generate_study_population_unvax_diabetes_analyis
    Status:
    Failed
    Job identifier:
    3ukmf7beylrlcua4
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    diabetes_post_hoc_prevax
    Status:
    Failed
    Job identifier:
    dnu2mdwocfukrgca
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    diabetes_post_hoc_vax
    Status:
    Failed
    Job identifier:
    2szo6wfxkzp7xcxl
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    diabetes_post_hoc_unvax
    Status:
    Failed
    Job identifier:
    lwkhdfrj5lbs3wo4
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 98:57:51

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
diabetes-post-hoc-analysis
Requested by
Kurt Taylor
Branch
add-new-diabetes-analyses
Force run dependencies
No
Git commit hash
387a0e4
Requested actions
  • vax_eligibility_inputs
  • generate_study_population_prelim
  • generate_index_dates
  • generate_study_population_prevax
  • generate_study_population_vax
  • generate_study_population_unvax
  • preprocess_data_prevax
  • preprocess_data_vax
  • preprocess_data_unvax
  • stage1_data_cleaning_all
  • stage1_end_date_table_prevax
  • stage1_end_date_table_vax
  • stage1_end_date_table_unvax
  • generate_study_population_prevax_diabetes_analyis
  • generate_study_population_vax_diabetes_analyis
  • generate_study_population_unvax_diabetes_analyis
  • diabetes_post_hoc_prevax
  • diabetes_post_hoc_vax
  • diabetes_post_hoc_unvax
  • stage2_missing_table1_all
  • stage3_diabetes_flow_prevax
  • stage3_diabetes_flow_vax
  • stage3_diabetes_flow_unvax
  • stage4_table_2_prevax
  • stage4_table_2_vax
  • stage4_table_2_unvax
  • stage4_venn_diagram_all

Code comparison

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