Skip to content

Job request: 4147

Organisation:
University of Bristol
Workspace:
nhsdtre_replication
ID:
mjyods62fnz467x4
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Venexia Walker requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    mdl3b_fullyadj
    Status:
    Status: Succeeded
    Job identifier:
    7soeqyavgmfwsupt

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 10000

actions:

  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition
    outputs:
      highly_sensitive:
        cohort: output/input.csv

  covariate_check_ages_40_60_80:
    run: r:latest analysis/covariate_check.R 40_60_80
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        covariate_check_ages: output/covariate_check_ages_40_60_80.csv

  mdl1_unadj:
      run: r:latest analysis/vw_01_pipe.R mdl1_unadj AMI all
      needs: [generate_study_population]
      outputs:
        moderately_sensitive:
          tbl_event_count: output/tbl_event_count_mdl1_unadj_infection_AMI_all.csv
          tbl_hr: output/tbl_hr_mdl1_unadj_infection_AMI_all.csv

  mdl3b_fullyadj:
      run: r:latest analysis/vw_01_pipe.R mdl3b_fullyadj AMI all
      needs: [generate_study_population]
      outputs:
        moderately_sensitive:
          tbl_event_count: output/tbl_event_count_mdl3b_fullyadj_infection_AMI_all.csv
          tbl_hr: output/tbl_hr_mdl3b_fullyadj_infection_AMI_all.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 03:31:10

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
nhsdtre_replication
Requested by
Venexia Walker
Branch
main
Force run dependencies
No
Git commit hash
3acc9d6
Requested actions
  • mdl3b_fullyadj

Code comparison

Compare the code used in this job request