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Job request: 10978

Organisation:
University of Bristol
Workspace:
post-covid-diabetes-new-study-def-test
ID:
hyhabvkf63jc6rgs
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Kurt Taylor requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    vax_eligibility_inputs
    Status:
    Succeeded
    Job identifier:
    72oj2ksbfmhyrnp2
  • Action:
    generate_study_population_prelim
    Status:
    Succeeded
    Job identifier:
    ivnlgoxsqf7pf64z
  • Action:
    generate_index_dates
    Status:
    Succeeded
    Job identifier:
    io27e7tfw656aski
  • Action:
    generate_study_population_vax
    Status:
    Succeeded
    Job identifier:
    j3din5gfxkvhpjfo
  • Action:
    generate_study_population_unvax
    Status:
    Succeeded
    Job identifier:
    w7hr4oqx5wpvsdcx
  • Action:
    generate_study_population_prevax
    Status:
    Succeeded
    Job identifier:
    rviqz2fgy6qqsjvs
  • Action:
    preprocess_data_vax
    Status:
    Succeeded
    Job identifier:
    yecae7gm3u7y2vde
  • Action:
    preprocess_data_prevax
    Status:
    Succeeded
    Job identifier:
    qj7maxuw7agvua5n
  • Action:
    preprocess_data_unvax
    Status:
    Succeeded
    Job identifier:
    ixrk4lfzphtvzwhk
  • Action:
    stage1_data_cleaning_all
    Status:
    Succeeded
    Job identifier:
    w3zkln4bmwb3fvck
  • Action:
    stage1_end_date_table_vax
    Status:
    Succeeded
    Job identifier:
    we6kx3asy47s6nea
  • Action:
    stage1_end_date_table_unvax
    Status:
    Succeeded
    Job identifier:
    olodjyo5upqamlta
  • Action:
    stage3_diabetes_flow_vax
    Status:
    Succeeded
    Job identifier:
    hwuvsa3v2s37moiy
  • Action:
    stage3_diabetes_flow_prevax
    Status:
    Succeeded
    Job identifier:
    fxfxwpydbasgeohn
  • Action:
    stage3_diabetes_flow_unvax
    Status:
    Succeeded
    Job identifier:
    tokvwigbcrvemyc5
  • Action:
    stage1_end_date_table_prevax
    Status:
    Succeeded
    Job identifier:
    yg3enadsog4vbpk2
  • Action:
    stage2_missing_table1_all
    Status:
    Succeeded
    Job identifier:
    5i3muaubshvrczbb
  • Action:
    Analysis_cox_t2dm_obes_no_unvax
    Status:
    Failed
    Job identifier:
    ci6ct5meb566eyau
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    Analysis_cox_t1dm_unvax
    Status:
    Failed
    Job identifier:
    nv3b7ec76uxdcosx
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    stage4_table_2_unvax
    Status:
    Succeeded
    Job identifier:
    mueqztdswtbz2gbp
  • Action:
    Analysis_cox_otherdm_unvax
    Status:
    Succeeded
    Job identifier:
    4cfs73q5fni364oh
  • Action:
    Analysis_cox_t2dm_pd_unvax
    Status:
    Succeeded
    Job identifier:
    xtdmbakeczrwbqfm
  • Action:
    Analysis_cox_t2dm_obes_unvax
    Status:
    Succeeded
    Job identifier:
    u4ezy66cqdfkoym6
  • Action:
    Analysis_cox_gestationaldm_unvax
    Status:
    Failed
    Job identifier:
    uyhj7d6slgiucpec
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    Analysis_cox_t2dm_pd_no_unvax
    Status:
    Succeeded
    Job identifier:
    3gi4hruiclvyw7xy
  • Action:
    Analysis_cox_t2dm_unvax
    Status:
    Succeeded
    Job identifier:
    5lvavyyrvcao7mtx
  • Action:
    Analysis_cox_otherdm_prevax
    Status:
    Failed
    Job identifier:
    vhf7tnzkkfwxuypa
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    stage4_table_2_prevax
    Status:
    Succeeded
    Job identifier:
    2t7qlpalalzmbeut
  • Action:
    Analysis_cox_t2dm_obes_no_prevax
    Status:
    Failed
    Job identifier:
    jueq4bupcxnoi74z
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    Analysis_cox_t2dm_obes_prevax
    Status:
    Succeeded
    Job identifier:
    locjslehp3cca5rq
  • Action:
    Analysis_cox_t2dm_pd_prevax
    Status:
    Succeeded
    Job identifier:
    yyuoind2vek3fzwi
  • Action:
    Analysis_cox_t2dm_pd_no_prevax
    Status:
    Failed
    Job identifier:
    m3xujn6v7dehyqnm
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    Analysis_cox_gestationaldm_prevax
    Status:
    Failed
    Job identifier:
    ihegag72cscj7wqv
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    Analysis_cox_t2dm_prevax
    Status:
    Failed
    Job identifier:
    ywn74w334y3micqc
    Error:
    nonzero_exit: Job exited with error code 137: Ran out of memory (limit for this job was 128.00GB)
  • Action:
    Analysis_cox_t1dm_prevax
    Status:
    Failed
    Job identifier:
    u2cp3nzgnvzkcl2d
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    Analysis_cox_t2dm_obes_vax
    Status:
    Succeeded
    Job identifier:
    xrpjdwt26jsnpa7t
  • Action:
    Analysis_cox_t1dm_vax
    Status:
    Failed
    Job identifier:
    fbli4zanihbiip4x
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    Analysis_cox_t2dm_obes_no_vax
    Status:
    Failed
    Job identifier:
    4bvtl37wtuwhwagi
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    Analysis_cox_t2dm_pd_vax
    Status:
    Failed
    Job identifier:
    hcwkrxh5ylrdsrem
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    Analysis_cox_t2dm_pd_no_vax
    Status:
    Failed
    Job identifier:
    hyj5p5z64s5j7bm5
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    Analysis_cox_otherdm_vax
    Status:
    Failed
    Job identifier:
    hpseihsgw2fmn3hn
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    stage4_table_2_vax
    Status:
    Succeeded
    Job identifier:
    wb26qnb4mox4wshz
  • Action:
    Analysis_cox_gestationaldm_vax
    Status:
    Failed
    Job identifier:
    ztw64i5ivs6rqipz
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    stage4_venn_diagram_all
    Status:
    Succeeded
    Job identifier:
    msvptgreju6bpxvc
  • Action:
    Analysis_cox_t2dm_vax
    Status:
    Failed
    Job identifier:
    ku6rrrf2hik465us
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    format_table1
    Status:
    Succeeded
    Job identifier:
    5wpgybl6n67dkbf3

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 408:54:04

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-diabetes-new-study-def-test
Requested by
Kurt Taylor
Branch
make-diabetes-three-cohort-repo
Force run dependencies
No
Git commit hash
118f638
Requested actions
  • vax_eligibility_inputs
  • generate_study_population_prelim
  • generate_index_dates
  • generate_study_population_prevax
  • generate_study_population_vax
  • generate_study_population_unvax
  • preprocess_data_prevax
  • preprocess_data_vax
  • preprocess_data_unvax
  • stage1_data_cleaning_all
  • stage1_end_date_table_prevax
  • stage1_end_date_table_vax
  • stage1_end_date_table_unvax
  • stage2_missing_table1_all
  • format_table1
  • stage3_diabetes_flow_prevax
  • stage3_diabetes_flow_vax
  • stage3_diabetes_flow_unvax
  • stage4_table_2_prevax
  • stage4_table_2_vax
  • stage4_table_2_unvax
  • stage4_venn_diagram_all
  • Analysis_cox_t1dm_prevax
  • Analysis_cox_t1dm_vax
  • Analysis_cox_t1dm_unvax
  • Analysis_cox_t2dm_prevax
  • Analysis_cox_t2dm_vax
  • Analysis_cox_t2dm_unvax
  • Analysis_cox_t2dm_pd_prevax
  • Analysis_cox_t2dm_pd_vax
  • Analysis_cox_t2dm_pd_unvax
  • Analysis_cox_t2dm_pd_no_prevax
  • Analysis_cox_t2dm_pd_no_vax
  • Analysis_cox_t2dm_pd_no_unvax
  • Analysis_cox_t2dm_obes_prevax
  • Analysis_cox_t2dm_obes_vax
  • Analysis_cox_t2dm_obes_unvax
  • Analysis_cox_t2dm_obes_no_prevax
  • Analysis_cox_t2dm_obes_no_vax
  • Analysis_cox_t2dm_obes_no_unvax
  • Analysis_cox_otherdm_prevax
  • Analysis_cox_otherdm_vax
  • Analysis_cox_otherdm_unvax
  • Analysis_cox_gestationaldm_prevax
  • Analysis_cox_gestationaldm_vax
  • Analysis_cox_gestationaldm_unvax

Code comparison

Compare the code used in this job request