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Job request: 11158

Organisation:
University of Bristol
Workspace:
post-covid-diabetes-new-study-def-test
ID:
zhqycdtttzlzgq2c
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Kurt Taylor requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population_unvax
    Status:
    Status: Failed
    Job identifier:
    fqldb5nugrmejpru
    Error:
    nonzero_exit: Job exited with error code 5: Something went wrong with the database, please contact tech support
  • Action:
    generate_study_population_vax
    Status:
    Status: Failed
    Job identifier:
    aygqx5lg3hne5db6
    Error:
    nonzero_exit: Job exited with error code 5: Something went wrong with the database, please contact tech support
  • Action:
    generate_study_population_prevax
    Status:
    Status: Succeeded
    Job identifier:
    a3lhw4seahjsmr4k
  • Action:
    preprocess_data_prevax
    Status:
    Status: Failed
    Job identifier:
    ng4jhdzz5mdnjv6e
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    preprocess_data_unvax
    Status:
    Status: Failed
    Job identifier:
    tskbvrr3r7lcvidy
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    preprocess_data_vax
    Status:
    Status: Failed
    Job identifier:
    hxxdgjpabs3543rg
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 24:16:07

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-diabetes-new-study-def-test
Requested by
Kurt Taylor
Branch
make-diabetes-three-cohort-repo
Force run dependencies
No
Git commit hash
c20a61d
Requested actions
  • generate_study_population_prevax
  • generate_study_population_vax
  • generate_study_population_unvax
  • preprocess_data_prevax
  • preprocess_data_vax
  • preprocess_data_unvax

Code comparison

Compare the code used in this job request