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Job request: 10395

Organisation:
University of Bristol
Workspace:
post-covid-diabetes
ID:
vx7eywrtsqfmon2s
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Kurt Taylor requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    vax_eligibility_inputs
    Status:
    Succeeded
    Job identifier:
    hbfep4xqmhuomyar
  • Action:
    generate_study_population_index
    Status:
    Failed
    Job identifier:
    blp3eqs3m2uwqm7n
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_vaccinated
    Status:
    Failed
    Job identifier:
    xo7heqr4qe7hhgyy
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    fme5psff7gglaxzr
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_pd_vaccinated
    Status:
    Failed
    Job identifier:
    x5fu2fpqvkqlci53
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t2dm_vaccinated
    Status:
    Failed
    Job identifier:
    yrwjdhkvejbnzydt
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage1_end_date_table_vaccinated
    Status:
    Failed
    Job identifier:
    72xxe3xnsc274myg
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage2_missing_table1_both
    Status:
    Failed
    Job identifier:
    hbcwsk3x6xvitkbz
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage3_diabetes_flow_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    mabnmqiwei7epx4h
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage_2_events_split_by_covariate_level_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    3hwnv222fxsas23d
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t2dm_obes_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    2o26wlagasveugh3
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t2dm_obes_no_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    wx7ykv6jhuttuklz
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t2dm_obes_no_vaccinated
    Status:
    Failed
    Job identifier:
    jaf2muo4nisy5px3
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    preprocess_data_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    3mqgrnyzled5wrqy
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    preprocess_data_vaccinated
    Status:
    Failed
    Job identifier:
    edty7xbjewwixlc6
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage1_data_cleaning_both
    Status:
    Failed
    Job identifier:
    hqmndrwc434ay65w
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage4_table_2_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    hjctnqxn5nqqr6xp
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage4_table_2_vaccinated
    Status:
    Failed
    Job identifier:
    267ywvzipledjqmc
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage4_venn_diagram_both
    Status:
    Failed
    Job identifier:
    7nzkdw2mnn36solv
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t1dm_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    p3v2miz47xm2w7fm
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t1dm_vaccinated
    Status:
    Failed
    Job identifier:
    6kwdkyz4jvjfa2mr
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t2dm_pd_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    asakztnpmatmbk24
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t2dm_pd_no_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    7v3ey3owounxgldc
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_gestationaldm_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    nst3lnlyrvyplpr5
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t2dm_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    enme4ydvwclkdlod
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t2dm_obes_vaccinated
    Status:
    Failed
    Job identifier:
    rjxsdy24xaljrjkr
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t2dm_pd_no_vaccinated
    Status:
    Failed
    Job identifier:
    w5olt3nhsm6pcd7c
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage1_end_date_table_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    aegjzcxgfcichujn
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage3_diabetes_flow_vaccinated
    Status:
    Failed
    Job identifier:
    z24erdpufcsh3ydt
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage_2_events_split_by_covariate_level_vaccinated
    Status:
    Failed
    Job identifier:
    nyvux6x7ggvob7bu
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_gestationaldm_vaccinated
    Status:
    Failed
    Job identifier:
    3ir5kznntbqhfryt
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_otherdm_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    bg374tigb5fgzkge
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_otherdm_vaccinated
    Status:
    Failed
    Job identifier:
    gzhuov6ea7m4yqqh
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 15:47:00

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-diabetes
Requested by
Kurt Taylor
Branch
main
Force run dependencies
Yes
Git commit hash
3e1cb5a
Requested actions
  • vax_eligibility_inputs
  • generate_study_population_electively_unvaccinated
  • generate_study_population_vaccinated
  • generate_study_population_index
  • preprocess_data_vaccinated
  • preprocess_data_electively_unvaccinated
  • stage1_data_cleaning_both
  • stage1_end_date_table_vaccinated
  • stage1_end_date_table_electively_unvaccinated
  • stage2_missing_table1_both
  • stage_2_events_split_by_covariate_level_vaccinated
  • stage_2_events_split_by_covariate_level_electively_unvaccinated
  • stage3_diabetes_flow_vaccinated
  • stage3_diabetes_flow_electively_unvaccinated
  • stage4_table_2_vaccinated
  • stage4_table_2_electively_unvaccinated
  • stage4_venn_diagram_both
  • Analysis_cox_t1dm_vaccinated
  • Analysis_cox_t1dm_electively_unvaccinated
  • Analysis_cox_t2dm_vaccinated
  • Analysis_cox_t2dm_electively_unvaccinated
  • Analysis_cox_t2dm_pd_vaccinated
  • Analysis_cox_t2dm_pd_electively_unvaccinated
  • Analysis_cox_t2dm_pd_no_vaccinated
  • Analysis_cox_t2dm_pd_no_electively_unvaccinated
  • Analysis_cox_t2dm_obes_vaccinated
  • Analysis_cox_t2dm_obes_electively_unvaccinated
  • Analysis_cox_t2dm_obes_no_vaccinated
  • Analysis_cox_t2dm_obes_no_electively_unvaccinated
  • Analysis_cox_otherdm_vaccinated
  • Analysis_cox_otherdm_electively_unvaccinated
  • Analysis_cox_gestationaldm_vaccinated
  • Analysis_cox_gestationaldm_electively_unvaccinated

Code comparison

Compare the code used in this job request