Skip to content

Job request: 10417

Organisation:
University of Bristol
Workspace:
post-covid-diabetes
ID:
qrn5vmnxeesvzewd
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Kurt Taylor requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    vax_eligibility_inputs
    Status:
    Succeeded
    Job identifier:
    725fu4c2gnmyiotn
  • Action:
    generate_study_population_index
    Status:
    Succeeded
    Job identifier:
    cnnjtsidzyqb5oqj
  • Action:
    generate_study_population_vaccinated
    Status:
    Succeeded
    Job identifier:
    tk7ul4zwfqj4ofhn
  • Action:
    generate_study_population_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    ehj6dz6uytv6wv7g
    Error:
    nonzero_exit: Job exited with error code 5: Ran out of memory (limit for this job was 128.00GB)
  • Action:
    stage1_end_date_table_vaccinated
    Status:
    Failed
    Job identifier:
    6eagevbhgzfn6ne5
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage2_missing_table1_both
    Status:
    Failed
    Job identifier:
    mnjifrsnzrd4w7mk
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage3_diabetes_flow_vaccinated
    Status:
    Failed
    Job identifier:
    luzy3jnsw7txdfap
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage4_table_2_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    fcm7udkjymwzaejp
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage4_table_2_vaccinated
    Status:
    Failed
    Job identifier:
    dwcqjopkqli6t5yv
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage4_venn_diagram_both
    Status:
    Failed
    Job identifier:
    6gyxjfrsdeyjyfuw
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage_2_events_split_by_covariate_level_vaccinated
    Status:
    Failed
    Job identifier:
    fxjzy2kjxb6ywgqz
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_otherdm_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    dvqcvwjcuy65tpfo
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t1dm_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    if5eh3p6ah32t4ft
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_gestationaldm_vaccinated
    Status:
    Failed
    Job identifier:
    o2jmkvvfzz3hpaqc
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_otherdm_vaccinated
    Status:
    Failed
    Job identifier:
    nzwsju2usawzr34d
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t1dm_vaccinated
    Status:
    Failed
    Job identifier:
    fqzfcf5alaypfere
    Error:
    Internal error: this usually means a platform issue rather than a problem for users to fix. The tech team are automatically notified of these errors and will be investigating.
  • Action:
    Analysis_cox_t2dm_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    d26ersovg7y53f57
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t2dm_obes_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    2z3nhvh7ezgzxexu
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t2dm_obes_no_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    fqttvpuovniwlptd
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t2dm_obes_no_vaccinated
    Status:
    Failed
    Job identifier:
    oacviov7gbdhusax
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t2dm_obes_vaccinated
    Status:
    Failed
    Job identifier:
    urbz6f43an6lg7hj
    Error:
    Internal error: this usually means a platform issue rather than a problem for users to fix. The tech team are automatically notified of these errors and will be investigating.
  • Action:
    Analysis_cox_t2dm_pd_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    7va3erjmcavpwch4
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t2dm_pd_no_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    bhq7jh62misqsaoj
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t2dm_pd_no_vaccinated
    Status:
    Failed
    Job identifier:
    sg2ri7kwetaiu4f6
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t2dm_vaccinated
    Status:
    Failed
    Job identifier:
    fcxwphvqeyilzgvc
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    preprocess_data_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    cqh5scei46avbvhp
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    preprocess_data_vaccinated
    Status:
    Failed
    Job identifier:
    7z25hno4acenmps2
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage3_diabetes_flow_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    qs5i6k5yjxz3vsv4
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_t2dm_pd_vaccinated
    Status:
    Failed
    Job identifier:
    ksjuwce56eu2purm
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage_2_events_split_by_covariate_level_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    v5janujgphq6zewy
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage1_data_cleaning_both
    Status:
    Failed
    Job identifier:
    tstn5bx2iew7wm3n
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    Analysis_cox_gestationaldm_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    imacpb4kz4qnacuo
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage1_end_date_table_electively_unvaccinated
    Status:
    Failed
    Job identifier:
    jponoailimieob5b
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
This file is too large to render, try viewing it on GitHub .

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 34:31:10

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-diabetes
Requested by
Kurt Taylor
Branch
main
Force run dependencies
Yes
Git commit hash
3e1cb5a
Requested actions
  • run_all

Code comparison

Compare the code used in this job request