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Job request: 12598

Organisation:
University of Bristol
Workspace:
post-covid-diabetes
ID:
b4ymv7ql4xffjfsn
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Kurt Taylor requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    vax_eligibility_inputs
    Status:
    Succeeded
    Job identifier:
    kl7bhckzoesus42d
  • Action:
    generate_study_population_prelim
    Status:
    Succeeded
    Job identifier:
    lf5rumaovks5cgmv
  • Action:
    generate_index_dates
    Status:
    Succeeded
    Job identifier:
    p5r5p6x3arfwfnsu
  • Action:
    generate_study_population_vax
    Status:
    Succeeded
    Job identifier:
    2vyldfett7ww43qb
  • Action:
    generate_study_population_unvax
    Status:
    Succeeded
    Job identifier:
    av5rtnpiddt2acrh
  • Action:
    generate_study_population_prevax
    Status:
    Succeeded
    Job identifier:
    ezry3ygriixumffp
  • Action:
    preprocess_data_unvax
    Status:
    Succeeded
    Job identifier:
    oehl3se3ye5x6npv
  • Action:
    preprocess_data_prevax
    Status:
    Succeeded
    Job identifier:
    mw7h26ymcqzbj7dk
  • Action:
    preprocess_data_vax
    Status:
    Succeeded
    Job identifier:
    bm56bvfvnjysjlgu
  • Action:
    stage1_data_cleaning_unvax
    Status:
    Succeeded
    Job identifier:
    wozzbbimadpgmiwp
  • Action:
    stage1_data_cleaning_prevax
    Status:
    Succeeded
    Job identifier:
    bewbpmuaztlkon5y
  • Action:
    stage1_data_cleaning_vax
    Status:
    Succeeded
    Job identifier:
    uan32oz3fd46wm7p
  • Action:
    stage1_end_date_table_unvax
    Status:
    Succeeded
    Job identifier:
    qwkungcus52xgw4r
  • Action:
    stage1_end_date_table_prevax
    Status:
    Succeeded
    Job identifier:
    7aybjjnlpn4mqx5t
  • Action:
    Analysis_cox_t2dm_post_rec_prevax
    Status:
    Succeeded
    Job identifier:
    lc7hxy7rbqvwl64y
  • Action:
    Analysis_cox_t2dm_pd_no_unvax
    Status:
    Succeeded
    Job identifier:
    qukgyfmar2pa4us3
  • Action:
    Analysis_cox_gestationaldm_unvax
    Status:
    Succeeded
    Job identifier:
    c573bb7wsaa3a5yd
  • Action:
    Analysis_cox_t2dm_obes_prevax
    Status:
    Succeeded
    Job identifier:
    dvf7uffuvquljl5z
  • Action:
    Analysis_cox_t2dm_pd_unvax
    Status:
    Succeeded
    Job identifier:
    3vkeuc4he4ixe2na
  • Action:
    stage2_missing_table1_all
    Status:
    Succeeded
    Job identifier:
    jq6pfzogetordo6g
  • Action:
    Analysis_cox_t2dm_obes_no_prevax
    Status:
    Succeeded
    Job identifier:
    5akmyivvnobaqoa7
  • Action:
    stage3_diabetes_flow_vax
    Status:
    Succeeded
    Job identifier:
    gumjsp34hjupa4co
  • Action:
    Analysis_cox_t1dm_prevax
    Status:
    Succeeded
    Job identifier:
    6yoycehox4wezlgl
  • Action:
    stage1_end_date_table_vax
    Status:
    Succeeded
    Job identifier:
    ntvlovvou2uj5d6n
  • Action:
    Analysis_cox_t2dm_pre_rec_unvax
    Status:
    Succeeded
    Job identifier:
    hrwv5vxcjaavq7oz
  • Action:
    Analysis_cox_t2dm_rec_prevax
    Status:
    Succeeded
    Job identifier:
    7gycofs73gtcmcbs
  • Action:
    Analysis_cox_t2dm_pd_no_prevax
    Status:
    Succeeded
    Job identifier:
    s3jtg7tes6df6mdx
  • Action:
    Analysis_cox_otherdm_prevax
    Status:
    Succeeded
    Job identifier:
    ej5uqkbi6q4lgltm
  • Action:
    stage3_diabetes_flow_prevax
    Status:
    Succeeded
    Job identifier:
    3qjvs3th6lnfp3bi
  • Action:
    Analysis_cox_t2dm_prevax
    Status:
    Succeeded
    Job identifier:
    ez3eobgwppjqvaow
  • Action:
    Analysis_cox_t1dm_unvax
    Status:
    Succeeded
    Job identifier:
    czi572l74o62pwpl
  • Action:
    Analysis_cox_t2dm_pd_prevax
    Status:
    Succeeded
    Job identifier:
    4fiykbbbdzjcveys
  • Action:
    stage3_diabetes_flow_unvax
    Status:
    Succeeded
    Job identifier:
    4oxitvyrhtljng3z
  • Action:
    Analysis_cox_t2dm_obes_unvax
    Status:
    Succeeded
    Job identifier:
    cjiiiez5tgjjdrnb
  • Action:
    stage4_table_2_prevax
    Status:
    Succeeded
    Job identifier:
    lmi75zyyygwfw32l
  • Action:
    Analysis_cox_t2dm_obes_no_unvax
    Status:
    Succeeded
    Job identifier:
    6ifd46oiyd3dpyy4
  • Action:
    Analysis_cox_t2dm_pre_rec_prevax
    Status:
    Succeeded
    Job identifier:
    o4bs65cgc7dgl6eu
  • Action:
    Analysis_cox_gestationaldm_prevax
    Status:
    Succeeded
    Job identifier:
    4fpfs5v4rgix3cde
  • Action:
    Analysis_cox_t2dm_unvax
    Status:
    Succeeded
    Job identifier:
    xgzekrwlqzqyiqfc
  • Action:
    Analysis_cox_otherdm_unvax
    Status:
    Succeeded
    Job identifier:
    hw2bcachn4x7nv3j
  • Action:
    stage4_table_2_unvax
    Status:
    Succeeded
    Job identifier:
    x4pgunxhxdvzltp7
  • Action:
    Analysis_cox_otherdm_vax
    Status:
    Succeeded
    Job identifier:
    mmkhlrhnvv6blmba
  • Action:
    Analysis_cox_t2dm_obes_no_vax
    Status:
    Succeeded
    Job identifier:
    2xgcv4nxb4jp6v3l
  • Action:
    Analysis_cox_t2dm_pd_vax
    Status:
    Succeeded
    Job identifier:
    vnuryuppp7tsc55y
  • Action:
    Analysis_cox_t2dm_pre_rec_vax
    Status:
    Succeeded
    Job identifier:
    zlclixew3arstfje
  • Action:
    Analysis_cox_t1dm_vax
    Status:
    Succeeded
    Job identifier:
    cf7wag2zbhfwtdvh
  • Action:
    stage4_venn_diagram_all
    Status:
    Succeeded
    Job identifier:
    5pbbz3zlmqodkkgn
  • Action:
    Analysis_cox_t2dm_obes_vax
    Status:
    Succeeded
    Job identifier:
    26fdix3zz3ucj6rl
  • Action:
    Analysis_cox_t2dm_pd_no_vax
    Status:
    Succeeded
    Job identifier:
    xlwdv5ywp53v6f42
  • Action:
    stage4_table_2_vax
    Status:
    Succeeded
    Job identifier:
    varvnce2g3atcku5
  • Action:
    Analysis_cox_t2dm_vax
    Status:
    Succeeded
    Job identifier:
    zwc66kjihyricd7e
  • Action:
    Analysis_cox_gestationaldm_vax
    Status:
    Succeeded
    Job identifier:
    p2rhuqanm5d6mhwp
  • Action:
    generate_study_population_prevax_diabetes_analyis
    Status:
    Succeeded
    Job identifier:
    xy7zadxbhbfojsbu
  • Action:
    generate_study_population_vax_diabetes_analyis
    Status:
    Succeeded
    Job identifier:
    unkgxl6lrwyp6rqu
  • Action:
    generate_study_population_unvax_diabetes_analyis
    Status:
    Succeeded
    Job identifier:
    oyq5zta65mmdlwql
  • Action:
    diabetes_post_hoc_prevax
    Status:
    Succeeded
    Job identifier:
    mdyemxj466arjolm
  • Action:
    diabetes_post_hoc_unvax
    Status:
    Succeeded
    Job identifier:
    zvx3aadejt7ly4g3
  • Action:
    diabetes_post_hoc_vax
    Status:
    Succeeded
    Job identifier:
    wp7fd2qx7dnfhqt2

Pipeline

Show project.yaml
This file is too large to render, try viewing it on GitHub .

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 405:15:26

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
post-covid-diabetes
Requested by
Kurt Taylor
Branch
main
Force run dependencies
No
Git commit hash
e7b1548
Requested actions
  • vax_eligibility_inputs
  • generate_study_population_prelim
  • generate_index_dates
  • generate_study_population_prevax
  • generate_study_population_vax
  • generate_study_population_unvax
  • preprocess_data_prevax
  • preprocess_data_vax
  • preprocess_data_unvax
  • stage1_data_cleaning_prevax
  • stage1_data_cleaning_vax
  • stage1_data_cleaning_unvax
  • stage1_end_date_table_prevax
  • stage1_end_date_table_vax
  • stage1_end_date_table_unvax
  • generate_study_population_prevax_diabetes_analyis
  • generate_study_population_vax_diabetes_analyis
  • generate_study_population_unvax_diabetes_analyis
  • diabetes_post_hoc_prevax
  • diabetes_post_hoc_vax
  • diabetes_post_hoc_unvax
  • stage2_missing_table1_all
  • stage3_diabetes_flow_prevax
  • stage3_diabetes_flow_vax
  • stage3_diabetes_flow_unvax
  • stage4_table_2_prevax
  • stage4_table_2_vax
  • stage4_table_2_unvax
  • stage4_venn_diagram_all
  • Analysis_cox_t1dm_prevax
  • Analysis_cox_t1dm_vax
  • Analysis_cox_t1dm_unvax
  • Analysis_cox_t2dm_prevax
  • Analysis_cox_t2dm_vax
  • Analysis_cox_t2dm_unvax
  • Analysis_cox_t2dm_pre_rec_prevax
  • Analysis_cox_t2dm_pre_rec_vax
  • Analysis_cox_t2dm_pre_rec_unvax
  • Analysis_cox_t2dm_pd_prevax
  • Analysis_cox_t2dm_pd_vax
  • Analysis_cox_t2dm_pd_unvax
  • Analysis_cox_t2dm_pd_no_prevax
  • Analysis_cox_t2dm_pd_no_vax
  • Analysis_cox_t2dm_pd_no_unvax
  • Analysis_cox_t2dm_obes_prevax
  • Analysis_cox_t2dm_obes_vax
  • Analysis_cox_t2dm_obes_unvax
  • Analysis_cox_t2dm_obes_no_prevax
  • Analysis_cox_t2dm_obes_no_vax
  • Analysis_cox_t2dm_obes_no_unvax
  • Analysis_cox_otherdm_prevax
  • Analysis_cox_otherdm_vax
  • Analysis_cox_otherdm_unvax
  • Analysis_cox_gestationaldm_prevax
  • Analysis_cox_gestationaldm_vax
  • Analysis_cox_gestationaldm_unvax
  • Analysis_cox_t2dm_rec_prevax
  • Analysis_cox_t2dm_post_rec_prevax

Code comparison

Compare the code used in this job request