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Job request: 12963

Organisation:
University of Bristol
Workspace:
post-covid-diabetes
ID:
4jark3p5kr5rfkvx
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Kurt Taylor requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    preprocess_data_prevax
    Status:
    Succeeded
    Job identifier:
    hueiknnahdhhtrnt
  • Action:
    preprocess_data_vax
    Status:
    Succeeded
    Job identifier:
    kmnjsabp5ojnzzwv
  • Action:
    preprocess_data_unvax
    Status:
    Succeeded
    Job identifier:
    ridh6wuyoqc5oued
  • Action:
    stage1_data_cleaning_unvax
    Status:
    Succeeded
    Job identifier:
    ryfqkd4ze6mpeeuq
  • Action:
    stage1_data_cleaning_prevax
    Status:
    Succeeded
    Job identifier:
    4y2gbuzbhgawllfl
  • Action:
    stage1_data_cleaning_vax
    Status:
    Succeeded
    Job identifier:
    o7cj7hgul2pvzben
  • Action:
    stage1_end_date_table_unvax
    Status:
    Succeeded
    Job identifier:
    iqbq3vdbvqahdym2
  • Action:
    stage1_end_date_table_prevax
    Status:
    Succeeded
    Job identifier:
    x7ahs2g3vqxtd35c
  • Action:
    stage3_diabetes_flow_prevax
    Status:
    Succeeded
    Job identifier:
    bc2bohrbtlwz6osp
  • Action:
    stage4_table_2_unvax
    Status:
    Succeeded
    Job identifier:
    2z3k5semeblkptrm
  • Action:
    stage3_diabetes_flow_unvax
    Status:
    Succeeded
    Job identifier:
    s4pruugc6o47s2ez
  • Action:
    stage3_diabetes_flow_vax
    Status:
    Succeeded
    Job identifier:
    rhwp7pvlqihaapuu
  • Action:
    stage2_missing_table1_all
    Status:
    Succeeded
    Job identifier:
    i3l7n2yhltb5cjzx
  • Action:
    stage1_end_date_table_vax
    Status:
    Succeeded
    Job identifier:
    mpr4pcurcpf56l4k
  • Action:
    stage4_table_2_prevax
    Status:
    Succeeded
    Job identifier:
    c45yzgwi42fjpm5v
  • Action:
    generate_study_population_prevax_diabetes_analyis
    Status:
    Succeeded
    Job identifier:
    b7wkhpoqd4odmawi
  • Action:
    stage4_venn_diagram_all
    Status:
    Succeeded
    Job identifier:
    3yebjwipg4odvtap
  • Action:
    stage4_table_2_vax
    Status:
    Succeeded
    Job identifier:
    a5jgbwgvmby3x4f3
  • Action:
    generate_study_population_unvax_diabetes_analyis
    Status:
    Succeeded
    Job identifier:
    q2fu4unuqn6obrtk
  • Action:
    generate_study_population_vax_diabetes_analyis
    Status:
    Succeeded
    Job identifier:
    jace47vy5detzdys
  • Action:
    diabetes_post_hoc_vax
    Status:
    Succeeded
    Job identifier:
    lszqwclteqsqfruc
  • Action:
    diabetes_post_hoc_prevax
    Status:
    Succeeded
    Job identifier:
    d44irbhdk7j23zki
  • Action:
    diabetes_post_hoc_unvax
    Status:
    Succeeded
    Job identifier:
    k44yetwripwvazab
  • Action:
    Analysis_cox_otherdm_vax
    Status:
    Failed
    Job identifier:
    gxfgn6smcahu3gib
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_obes_no_vax
    Status:
    Failed
    Job identifier:
    w2bechpqjhnnwfrd
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_obes_prevax
    Status:
    Failed
    Job identifier:
    nywem7jvmn7zvkvq
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_obes_vax
    Status:
    Failed
    Job identifier:
    aizzznbviffu55gn
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_pd_no_prevax
    Status:
    Failed
    Job identifier:
    qogny7hiihilq3ul
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_pd_no_unvax
    Status:
    Failed
    Job identifier:
    2tqui65eu35ryk4f
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_pd_no_vax
    Status:
    Failed
    Job identifier:
    umpf6zivzrmdq5go
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_pd_prevax
    Status:
    Failed
    Job identifier:
    xlfa7msj5q56fs35
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_prevax
    Status:
    Failed
    Job identifier:
    vmri5h4ipobfrly2
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_rec_prevax
    Status:
    Failed
    Job identifier:
    3thyu5hvmh5hvqdh
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_unvax
    Status:
    Failed
    Job identifier:
    5jkfhmowzpblefuq
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_vax
    Status:
    Failed
    Job identifier:
    nakrvdnncb2aixmc
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_pd_vax
    Status:
    Failed
    Job identifier:
    ilvswl7nsbsn7vxg
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_post_rec_prevax
    Status:
    Failed
    Job identifier:
    bm4hnf4w4rt7xhyu
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_pre_rec_prevax
    Status:
    Failed
    Job identifier:
    5376ajxdytsug23e
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_pre_rec_unvax
    Status:
    Failed
    Job identifier:
    mtuwhflkls3v22g2
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_pd_unvax
    Status:
    Failed
    Job identifier:
    7jqzs35ligotc2nt
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_gestationaldm_unvax
    Status:
    Failed
    Job identifier:
    mtohajvhzackkpdg
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_otherdm_unvax
    Status:
    Failed
    Job identifier:
    ej3tl4gn3vbhxlfw
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_obes_unvax
    Status:
    Failed
    Job identifier:
    5ftclaagonollbnp
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t1dm_vax
    Status:
    Failed
    Job identifier:
    l5qcxiyhok4e2fur
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t1dm_unvax
    Status:
    Failed
    Job identifier:
    sogk4zxy6m5ghby3
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_obes_no_unvax
    Status:
    Failed
    Job identifier:
    i6nm2jzhowwc4ekz
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t1dm_prevax
    Status:
    Failed
    Job identifier:
    o6lvxlbjn23adiwk
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_follow_prevax
    Status:
    Failed
    Job identifier:
    63mk2g6ixeitfqbo
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_gestationaldm_prevax
    Status:
    Failed
    Job identifier:
    4sdze57whilkhm4k
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_obes_no_prevax
    Status:
    Failed
    Job identifier:
    5hrizcvpz4l62kjw
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_t2dm_pre_rec_vax
    Status:
    Failed
    Job identifier:
    au46ls2kw7dqyuny
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_gestationaldm_vax
    Status:
    Failed
    Job identifier:
    ghkruhkmo6x5fmyd
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    Analysis_cox_otherdm_prevax
    Status:
    Failed
    Job identifier:
    z4o7o4sp2sspqync
    Error:
    cancelled_by_user: Cancelled by user

Pipeline

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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 82:13:27

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-diabetes
Requested by
Kurt Taylor
Branch
main
Force run dependencies
No
Git commit hash
046f24f
Requested actions
  • preprocess_data_prevax
  • preprocess_data_vax
  • preprocess_data_unvax
  • stage1_data_cleaning_prevax
  • stage1_data_cleaning_vax
  • stage1_data_cleaning_unvax
  • stage1_end_date_table_prevax
  • stage1_end_date_table_vax
  • stage1_end_date_table_unvax
  • generate_study_population_prevax_diabetes_analyis
  • generate_study_population_vax_diabetes_analyis
  • generate_study_population_unvax_diabetes_analyis
  • diabetes_post_hoc_prevax
  • diabetes_post_hoc_vax
  • diabetes_post_hoc_unvax
  • stage2_missing_table1_all
  • stage3_diabetes_flow_prevax
  • stage3_diabetes_flow_vax
  • stage3_diabetes_flow_unvax
  • stage4_table_2_prevax
  • stage4_table_2_vax
  • stage4_table_2_unvax
  • stage4_venn_diagram_all
  • Analysis_cox_t1dm_prevax
  • Analysis_cox_t1dm_vax
  • Analysis_cox_t1dm_unvax
  • Analysis_cox_t2dm_prevax
  • Analysis_cox_t2dm_vax
  • Analysis_cox_t2dm_unvax
  • Analysis_cox_t2dm_pre_rec_prevax
  • Analysis_cox_t2dm_pre_rec_vax
  • Analysis_cox_t2dm_pre_rec_unvax
  • Analysis_cox_t2dm_pd_prevax
  • Analysis_cox_t2dm_pd_vax
  • Analysis_cox_t2dm_pd_unvax
  • Analysis_cox_t2dm_pd_no_prevax
  • Analysis_cox_t2dm_pd_no_vax
  • Analysis_cox_t2dm_pd_no_unvax
  • Analysis_cox_t2dm_obes_prevax
  • Analysis_cox_t2dm_obes_vax
  • Analysis_cox_t2dm_obes_unvax
  • Analysis_cox_t2dm_obes_no_prevax
  • Analysis_cox_t2dm_obes_no_vax
  • Analysis_cox_t2dm_obes_no_unvax
  • Analysis_cox_otherdm_prevax
  • Analysis_cox_otherdm_vax
  • Analysis_cox_otherdm_unvax
  • Analysis_cox_gestationaldm_prevax
  • Analysis_cox_gestationaldm_vax
  • Analysis_cox_gestationaldm_unvax
  • Analysis_cox_t2dm_rec_prevax
  • Analysis_cox_t2dm_post_rec_prevax
  • Analysis_cox_t2dm_follow_prevax

Code comparison

Compare the code used in this job request