Skip to content

Job request: 13215

Organisation:
University of Bristol
Workspace:
post-covid-diabetes
ID:
3v5ahddcgufk4bye
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Kurt Taylor requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    stage1_data_cleaning_vax
    Status:
    Succeeded
    Job identifier:
    5g53suyzr5kmsltj
  • Action:
    stage1_data_cleaning_unvax
    Status:
    Succeeded
    Job identifier:
    x765lnwbutoy3y4x
  • Action:
    stata_cox_model_t2dm_main_vax_reduced
    Status:
    Failed
    Job identifier:
    rwpcrpuwnx2zyf3r
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    stata_cox_model_t2dm_covid_pheno_hospitalised_unvax_reduced
    Status:
    Failed
    Job identifier:
    nahmmuubcrlkth4z
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    stage1_data_cleaning_prevax
    Status:
    Succeeded
    Job identifier:
    lvu4wtypynb6eeod
  • Action:
    stata_cox_model_t2dm_covid_pheno_non_hospitalised_vax_reduced
    Status:
    Failed
    Job identifier:
    ctq6an6dkigrtgvc
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    stata_cox_model_t2dm_main_prevax_reduced
    Status:
    Failed
    Job identifier:
    j2cbh35kr7lr25ic
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    stata_cox_model_t2dm_main_unvax_reduced
    Status:
    Failed
    Job identifier:
    3le6plrxc7wuim2i
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    stata_cox_model_t2dm_covid_pheno_non_hospitalised_prevax_reduced
    Status:
    Failed
    Job identifier:
    imx3ju3qffhkmt27
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    stata_cox_model_t2dm_covid_pheno_hospitalised_prevax_reduced
    Status:
    Failed
    Job identifier:
    gs32d22kffpafwsz
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    stata_cox_model_t2dm_covid_pheno_non_hospitalised_unvax_reduced
    Status:
    Failed
    Job identifier:
    xvfmio2tt2wwcotq
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    stata_cox_model_t2dm_covid_pheno_hospitalised_vax_reduced
    Status:
    Failed
    Job identifier:
    g4ffbvhtcgm2zp7l
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    stage1_end_date_table_unvax
    Status:
    Succeeded
    Job identifier:
    oob5udalpo4hugtk
  • Action:
    stage1_end_date_table_prevax
    Status:
    Succeeded
    Job identifier:
    alsi746ugmkgb7qe
  • Action:
    generate_study_population_prevax_diabetes_analyis
    Status:
    Succeeded
    Job identifier:
    cqudytgq7ldby3zy
  • Action:
    generate_study_population_unvax_diabetes_analyis
    Status:
    Succeeded
    Job identifier:
    d6eufly5feu72rue
  • Action:
    stage1_end_date_table_vax
    Status:
    Succeeded
    Job identifier:
    si5h56uqpdiqp7mp
  • Action:
    generate_study_population_vax_diabetes_analyis
    Status:
    Succeeded
    Job identifier:
    62ctros2wbay7xhm
  • Action:
    diabetes_post_hoc_prevax
    Status:
    Succeeded
    Job identifier:
    fynyng5zb7vpv4ge
  • Action:
    diabetes_post_hoc_vax
    Status:
    Succeeded
    Job identifier:
    mtdicoezmwe6gebo
  • Action:
    diabetes_post_hoc_unvax
    Status:
    Succeeded
    Job identifier:
    3ofmi4vyfarykiyy
  • Action:
    Analysis_cox_t2dm_follow_prevax
    Status:
    Succeeded
    Job identifier:
    7ejd5s2btmm77jro
  • Action:
    stata_cox_model_t2dm_follow_main_prevax_reduced
    Status:
    Failed
    Job identifier:
    mzpgdylyeyjf53qd
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    stata_cox_model_t2dm_follow_covid_pheno_hospitalised_prevax_reduced
    Status:
    Failed
    Job identifier:
    wdnkrr2buu75auos
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    stata_cox_model_t2dm_follow_covid_pheno_non_hospitalised_prevax_reduced
    Status:
    Failed
    Job identifier:
    w3cxhmecaaz4odft
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    format_stata_output
    Status:
    Failed
    Job identifier:
    cbf26elspsu3xrbc
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
This file is too large to render, try viewing it on GitHub .

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 75:38:28

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-diabetes
Requested by
Kurt Taylor
Branch
main
Force run dependencies
No
Git commit hash
1484a25
Requested actions
  • stage1_data_cleaning_prevax
  • stage1_data_cleaning_vax
  • stage1_data_cleaning_unvax
  • stage1_end_date_table_prevax
  • stage1_end_date_table_vax
  • stage1_end_date_table_unvax
  • generate_study_population_prevax_diabetes_analyis
  • generate_study_population_vax_diabetes_analyis
  • generate_study_population_unvax_diabetes_analyis
  • diabetes_post_hoc_prevax
  • diabetes_post_hoc_vax
  • diabetes_post_hoc_unvax
  • Analysis_cox_t2dm_follow_prevax
  • stata_cox_model_t2dm_covid_pheno_hospitalised_prevax_reduced
  • stata_cox_model_t2dm_covid_pheno_hospitalised_vax_reduced
  • stata_cox_model_t2dm_covid_pheno_hospitalised_unvax_reduced
  • stata_cox_model_t2dm_main_prevax_reduced
  • stata_cox_model_t2dm_main_vax_reduced
  • stata_cox_model_t2dm_main_unvax_reduced
  • stata_cox_model_t2dm_covid_pheno_non_hospitalised_prevax_reduced
  • stata_cox_model_t2dm_covid_pheno_non_hospitalised_vax_reduced
  • stata_cox_model_t2dm_covid_pheno_non_hospitalised_unvax_reduced
  • stata_cox_model_t2dm_follow_covid_pheno_hospitalised_prevax_reduced
  • stata_cox_model_t2dm_follow_main_prevax_reduced
  • stata_cox_model_t2dm_follow_covid_pheno_non_hospitalised_prevax_reduced
  • format_stata_output

Code comparison

Compare the code used in this job request