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Job request: 15053

Organisation:
University of Bristol
Workspace:
post-covid-diabetes
ID:
2ijaasgabhgdn4pg
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Kurt Taylor requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    preprocess_data_prevax
    Status:
    Succeeded
    Job identifier:
    xsdfeygks5uafhbe
  • Action:
    preprocess_data_vax
    Status:
    Succeeded
    Job identifier:
    qotm2u62xpgmakeh
  • Action:
    preprocess_data_unvax
    Status:
    Succeeded
    Job identifier:
    pk7shxhy2nkrx4u6
  • Action:
    stage1_data_cleaning_prevax
    Status:
    Succeeded
    Job identifier:
    weialiw4jrnxmxdu
  • Action:
    stage1_data_cleaning_unvax
    Status:
    Succeeded
    Job identifier:
    pm46jk4cmf5br4oh
  • Action:
    stage1_data_cleaning_vax
    Status:
    Succeeded
    Job identifier:
    r4pyfhvmsoj6b3c3
  • Action:
    stage1_end_date_table_prevax
    Status:
    Succeeded
    Job identifier:
    5qjirwjtlurhv6tj
  • Action:
    stage1_end_date_table_unvax
    Status:
    Succeeded
    Job identifier:
    klz7jeqqiygu3vdi
  • Action:
    stage1_end_date_table_vax
    Status:
    Succeeded
    Job identifier:
    djc7zt3lwafti3v2
  • Action:
    Analysis_cox_gestationaldm_unvax_sens_unvax
    Status:
    Succeeded
    Job identifier:
    7lsqqlffhddthp3h
  • Action:
    stage4_table_2_unvax
    Status:
    Succeeded
    Job identifier:
    2e3iqhpaghrd7xv6
  • Action:
    Analysis_cox_t1dm_unvax_sens_unvax
    Status:
    Succeeded
    Job identifier:
    wmjawxffycibewzf
  • Action:
    Analysis_cox_otherdm_unvax_sens_unvax
    Status:
    Succeeded
    Job identifier:
    nfrn75xw7x7j2ers
  • Action:
    Analysis_cox_t2dm_unvax_sens_unvax
    Status:
    Failed
    Job identifier:
    ovn7l5xuu3tmitvy
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    stage4_table_2_prevax
    Status:
    Succeeded
    Job identifier:
    qfobjgiwg6tkpaz2
  • Action:
    stage4_table_2_vax
    Status:
    Succeeded
    Job identifier:
    o6d3f6e2ylz2kp7a
  • Action:
    stata_cox_model_t2dm_unvax_sens_covid_pheno_hospitalised_unvax_reduced_day0FALSE_extfFALSE
    Status:
    Failed
    Job identifier:
    djkhxf73ljqeug34
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stata_cox_model_t2dm_unvax_sens_main_unvax_reduced_day0FALSE_extfFALSE
    Status:
    Failed
    Job identifier:
    td4f6nhl5657mw2o
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stata_cox_model_t2dm_unvax_sens_covid_pheno_non_hospitalised_unvax_reduced_day0FALSE_extfFALSE
    Status:
    Failed
    Job identifier:
    ilyxrao2lwehpvhh
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    format_hazard_ratios
    Status:
    Failed
    Job identifier:
    ebscpfuisc4pn6fh
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    format_stata_output
    Status:
    Failed
    Job identifier:
    rguwb7k2uhxo5kpr
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 107:08:19

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-diabetes
Requested by
Kurt Taylor
Branch
main
Force run dependencies
No
Git commit hash
e420079
Requested actions
  • preprocess_data_prevax
  • preprocess_data_vax
  • preprocess_data_unvax
  • stage1_data_cleaning_prevax
  • stage1_data_cleaning_vax
  • stage1_data_cleaning_unvax
  • stage1_end_date_table_prevax
  • stage1_end_date_table_vax
  • stage1_end_date_table_unvax
  • stage4_table_2_prevax
  • stage4_table_2_vax
  • stage4_table_2_unvax
  • Analysis_cox_t2dm_unvax_sens_unvax
  • Analysis_cox_t1dm_unvax_sens_unvax
  • Analysis_cox_otherdm_unvax_sens_unvax
  • Analysis_cox_gestationaldm_unvax_sens_unvax
  • stata_cox_model_t2dm_unvax_sens_covid_pheno_hospitalised_unvax_reduced_day0FALSE_extfFALSE
  • stata_cox_model_t2dm_unvax_sens_main_unvax_reduced_day0FALSE_extfFALSE
  • stata_cox_model_t2dm_unvax_sens_covid_pheno_non_hospitalised_unvax_reduced_day0FALSE_extfFALSE
  • format_stata_output
  • format_hazard_ratios

Code comparison

Compare the code used in this job request