Job request: 18896
- Organisation:
- University of Bristol
- Workspace:
- post-covid-gastrointestina-extf
- ID:
- 3qs5juxtgczabrxh
This page shows the technical details of what happened when the authorised researcher Marwa Al Arab requested one or more actions to be run against real patient data within a secure environment.
By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.
The output security levels are:
-
highly_sensitive
- Researchers can never directly view these outputs
- Researchers can only request code is run against them
-
moderately_sensitive
- Can be viewed by an approved researcher by logging into a highly secure environment
- These are the only outputs that can be requested for public release via a controlled output review service.
Jobs
-
- Action:
- count_study_def_variables_unvax
- Status:
- Failed
- Job identifier:
-
umq6dlotygl7rl5o - Error:
- unmatched_patterns: No outputs found matching patterns: - output/not-for-review/study_counts_prepro_unvax.txt - output/not-for-review/study_counts_sd_unvax.txt
-
- Action:
- stage1_data_cleaning_unvax
- Status:
- Succeeded
- Job identifier:
-
mt2byjsxesrk6jn3
-
- Action:
- stage1_data_cleaning_vax
- Status:
- Succeeded
- Job identifier:
-
i7nz2fnlux2w7yxb
-
- Action:
- stage1_data_cleaning_prevax
- Status:
- Succeeded
- Job identifier:
-
2ymgtbxf7bn5qtes
-
- Action:
- make_model_input-cohort_unvax-main-lower_gi_bleeding
- Status:
- Failed
- Job identifier:
-
4uy6blxpavmwswys - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_unvax-main-variceal_gi_bleeding
- Status:
- Failed
- Job identifier:
-
gdvuwkrxo4tlnbex - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_unvax-main-upper_gi_bleeding
- Status:
- Failed
- Job identifier:
-
ov4c62x5fap2apeq - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_unvax-main-nonalcoholic_steatohepatitis
- Status:
- Failed
- Job identifier:
-
773vwpjfitamlbui - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- table1_unvax
- Status:
- Succeeded
- Job identifier:
-
odvv55akwqcwqdzn
-
- Action:
- make_model_input-cohort_unvax-main-acute_pancreatitis
- Status:
- Failed
- Job identifier:
-
gr2mqgi7wkv7fu4a - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_unvax-main-nonvariceal_gi_bleeding
- Status:
- Failed
- Job identifier:
-
ppzs5readcytyg3x - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_unvax-main-dyspepsia
- Status:
- Failed
- Job identifier:
-
ncf3xaitkw2a4xdc - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_unvax-main-gastro_oesophageal_reflux_disease
- Status:
- Failed
- Job identifier:
-
ydbqk264grzgujtt - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_unvax-main-gallstones_disease
- Status:
- Failed
- Job identifier:
-
g4mkdeqd5pc3c52y - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_unvax-main-ibs
- Status:
- Failed
- Job identifier:
-
vl6quhg3ghikwby7 - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_prevax-main-nonalcoholic_steatohepatitis
- Status:
- Failed
- Job identifier:
-
37ypcy3z67wr7t35 - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_prevax-main-peptic_ulcer
- Status:
- Failed
- Job identifier:
-
wt2om3dstjtt2lbv - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_unvax-main-appendicitis
- Status:
- Failed
- Job identifier:
-
k6nqvnrkbtdafq6w - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_prevax-main-dyspepsia
- Status:
- Failed
- Job identifier:
-
mdz2roqxz6637lnb - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_unvax-main-peptic_ulcer
- Status:
- Failed
- Job identifier:
-
tqjf4vr6pdngx5rx - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_prevax-main-upper_gi_bleeding
- Status:
- Failed
- Job identifier:
-
pd4hkgo5zspkef4z - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_prevax-main-gallstones_disease
- Status:
- Failed
- Job identifier:
-
gf52jyu534yve7fz - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_prevax-main-variceal_gi_bleeding
- Status:
- Failed
- Job identifier:
-
te4xjqjmzdxh2svf - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_prevax-main-gastro_oesophageal_reflux_disease
- Status:
- Failed
- Job identifier:
-
o43jld537rpwhnmw - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_prevax-main-ibs
- Status:
- Failed
- Job identifier:
-
tisjhjomvdum63wi - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_prevax-main-acute_pancreatitis
- Status:
- Failed
- Job identifier:
-
liqbal4wwntmhw6c - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- table1_prevax
- Status:
- Succeeded
- Job identifier:
-
37rhsmygdrswx4bk
-
- Action:
- make_model_input-cohort_prevax-main-lower_gi_bleeding
- Status:
- Failed
- Job identifier:
-
tkxsko6c4w5ddinx - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_prevax-main-appendicitis
- Status:
- Failed
- Job identifier:
-
ortvr5eobqe6wakq - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_prevax-main-nonvariceal_gi_bleeding
- Status:
- Failed
- Job identifier:
-
7gbgzmlwge7jxkgz - Error:
- nonzero_exit: Job exited with an error
-
- Action:
- make_model_input-cohort_vax-main-nonvariceal_gi_bleeding
- Status:
- Succeeded
- Job identifier:
-
rfvcs3suifpqh4m2
-
- Action:
- make_model_input-cohort_vax-main-appendicitis
- Status:
- Succeeded
- Job identifier:
-
6pa5edjl5yxfgwk2
-
- Action:
- make_model_input-cohort_vax-main-ibs
- Status:
- Succeeded
- Job identifier:
-
4qiwgd7434ngt5bn
-
- Action:
- make_model_input-cohort_vax-main-peptic_ulcer
- Status:
- Succeeded
- Job identifier:
-
sdqhu3hfdterptv5
-
- Action:
- make_model_input-cohort_vax-main-acute_pancreatitis
- Status:
- Succeeded
- Job identifier:
-
cnskcshe27fwf7l4
-
- Action:
- make_model_input-cohort_vax-main-nonalcoholic_steatohepatitis
- Status:
- Succeeded
- Job identifier:
-
5ii25qksrxukfdsi
-
- Action:
- make_model_input-cohort_vax-main-dyspepsia
- Status:
- Succeeded
- Job identifier:
-
wm6jpnpcfrhf5rwa
-
- Action:
- make_model_input-cohort_vax-main-gallstones_disease
- Status:
- Succeeded
- Job identifier:
-
6ro67mkk6b2eqqpl
-
- Action:
- make_model_input-cohort_vax-main-lower_gi_bleeding
- Status:
- Succeeded
- Job identifier:
-
uzqp2gq3on2tbigu
-
- Action:
- make_model_input-cohort_vax-main-upper_gi_bleeding
- Status:
- Succeeded
- Job identifier:
-
r6vdd2metoptuaiv
-
- Action:
- make_model_input-cohort_vax-main-gastro_oesophageal_reflux_disease
- Status:
- Succeeded
- Job identifier:
-
xytasev7wqcogleb
-
- Action:
- make_model_input-cohort_vax-main-variceal_gi_bleeding
- Status:
- Succeeded
- Job identifier:
-
62ttcqluqee2jbz5
-
- Action:
- table1_vax
- Status:
- Succeeded
- Job identifier:
-
ncm26qobdmgqvjpd
-
- Action:
- cox_ipw-cohort_vax-main-ibs
- Status:
- Succeeded
- Job identifier:
-
76hd5urqcvj5ynly
-
- Action:
- cox_ipw-cohort_vax-main-gastro_oesophageal_reflux_disease
- Status:
- Succeeded
- Job identifier:
-
opbzvlc7hi2jlx25
-
- Action:
- cox_ipw-cohort_vax-main-appendicitis
- Status:
- Succeeded
- Job identifier:
-
47towmv4u7bmpw4w
-
- Action:
- cox_ipw-cohort_vax-main-nonvariceal_gi_bleeding
- Status:
- Succeeded
- Job identifier:
-
qx5bjhdzqj42ukgs
-
- Action:
- cox_ipw-cohort_vax-main-gallstones_disease
- Status:
- Succeeded
- Job identifier:
-
xwcebjlxiiiv4ybq
-
- Action:
- cox_ipw-cohort_vax-main-upper_gi_bleeding
- Status:
- Succeeded
- Job identifier:
-
qstqahmogsflwf5l
-
- Action:
- cox_ipw-cohort_vax-main-variceal_gi_bleeding
- Status:
- Succeeded
- Job identifier:
-
ivwmmaedpbzvybif
-
- Action:
- cox_ipw-cohort_vax-main-dyspepsia
- Status:
- Succeeded
- Job identifier:
-
tjqdmrx6z27wjbdc
-
- Action:
- cox_ipw-cohort_vax-main-nonalcoholic_steatohepatitis
- Status:
- Succeeded
- Job identifier:
-
s7y2r25rnjalioby
-
- Action:
- cox_ipw-cohort_vax-main-peptic_ulcer
- Status:
- Succeeded
- Job identifier:
-
m67ib5k3ii57ogkc
-
- Action:
- cox_ipw-cohort_vax-main-acute_pancreatitis
- Status:
- Succeeded
- Job identifier:
-
2rxympvyvpt2ylzk
-
- Action:
- cox_ipw-cohort_vax-main-lower_gi_bleeding
- Status:
- Succeeded
- Job identifier:
-
pmbogq3o6mmngf5p
-
- Action:
- cox_ipw-cohort_unvax-main-appendicitis
- Status:
- Failed
- Job identifier:
-
ojzvdvfu2qexwibb - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_unvax-main-acute_pancreatitis
- Status:
- Failed
- Job identifier:
-
x4zzhfv6uphuvpch - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_prevax-main-variceal_gi_bleeding
- Status:
- Failed
- Job identifier:
-
7gobvlvx55wgt7jn - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_unvax-main-nonvariceal_gi_bleeding
- Status:
- Failed
- Job identifier:
-
yla2rjaqjolxg6rh - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_unvax-main-peptic_ulcer
- Status:
- Failed
- Job identifier:
-
4abqoagtkdpwc2jg - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_unvax-main-upper_gi_bleeding
- Status:
- Failed
- Job identifier:
-
nwhhbnmy5nyfemw6 - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_unvax-main-variceal_gi_bleeding
- Status:
- Failed
- Job identifier:
-
u7dwblwgckdbu57f - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_prevax-main-upper_gi_bleeding
- Status:
- Failed
- Job identifier:
-
trukedqozfm6i5qs - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_prevax-main-nonalcoholic_steatohepatitis
- Status:
- Failed
- Job identifier:
-
o5y2ax666x4b7j4r - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_prevax-main-lower_gi_bleeding
- Status:
- Failed
- Job identifier:
-
xtkw4dzprollc2mc - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_prevax-main-ibs
- Status:
- Failed
- Job identifier:
-
qbxy4xgroh66bsp2 - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_prevax-main-gallstones_disease
- Status:
- Failed
- Job identifier:
-
pse543effhhqbcnj - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_prevax-main-appendicitis
- Status:
- Failed
- Job identifier:
-
tiepmsympni237xj - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_prevax-main-acute_pancreatitis
- Status:
- Failed
- Job identifier:
-
dahgmijk3fhxuixv - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_prevax-main-nonvariceal_gi_bleeding
- Status:
- Failed
- Job identifier:
-
rnrb36jbglljxllr - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_unvax-main-gastro_oesophageal_reflux_disease
- Status:
- Failed
- Job identifier:
-
quzsnxgys35dtxgl - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_prevax-main-peptic_ulcer
- Status:
- Failed
- Job identifier:
-
tor7spytwbssez7l - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_prevax-main-gastro_oesophageal_reflux_disease
- Status:
- Failed
- Job identifier:
-
yckcxjzx6u5g42ah - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_unvax-main-dyspepsia
- Status:
- Failed
- Job identifier:
-
3ymwbchge4bpi2iq - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_prevax-main-dyspepsia
- Status:
- Failed
- Job identifier:
-
ni6vtjefj2vpeko5 - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_unvax-main-gallstones_disease
- Status:
- Failed
- Job identifier:
-
3jgklh56gwzq64hf - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_unvax-main-ibs
- Status:
- Failed
- Job identifier:
-
djmg7tr64bkqbvbp - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_unvax-main-lower_gi_bleeding
- Status:
- Failed
- Job identifier:
-
jiuy66cld4mpln72 - Error:
- dependency_failed: Not starting as dependency failed
-
- Action:
- cox_ipw-cohort_unvax-main-nonalcoholic_steatohepatitis
- Status:
- Failed
- Job identifier:
-
lsxtbmvimq7kve6g - Error:
- dependency_failed: Not starting as dependency failed
Pipeline
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Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 46:23:06
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job request
- Status
-
Failed
- Backend
- TPP
- Workspace
- post-covid-gastrointestina-extf
- Requested by
- Marwa Al Arab
- Branch
- main
- Force run dependencies
- No
- Git commit hash
- d1e181d
- Requested actions
-
-
count_study_def_variables_unvax -
stage1_data_cleaning_prevax -
stage1_data_cleaning_unvax -
stage1_data_cleaning_vax -
table1_prevax -
table1_unvax -
table1_vax -
make_model_input-cohort_prevax-main-acute_pancreatitis -
cox_ipw-cohort_prevax-main-acute_pancreatitis -
make_model_input-cohort_prevax-main-appendicitis -
cox_ipw-cohort_prevax-main-appendicitis -
make_model_input-cohort_prevax-main-dyspepsia -
cox_ipw-cohort_prevax-main-dyspepsia -
make_model_input-cohort_prevax-main-gallstones_disease -
cox_ipw-cohort_prevax-main-gallstones_disease -
make_model_input-cohort_prevax-main-gastro_oesophageal_reflux_disease -
cox_ipw-cohort_prevax-main-gastro_oesophageal_reflux_disease -
make_model_input-cohort_prevax-main-ibs -
cox_ipw-cohort_prevax-main-ibs -
make_model_input-cohort_prevax-main-lower_gi_bleeding -
cox_ipw-cohort_prevax-main-lower_gi_bleeding -
make_model_input-cohort_prevax-main-nonalcoholic_steatohepatitis -
cox_ipw-cohort_prevax-main-nonalcoholic_steatohepatitis -
make_model_input-cohort_prevax-main-nonvariceal_gi_bleeding -
cox_ipw-cohort_prevax-main-nonvariceal_gi_bleeding -
make_model_input-cohort_prevax-main-peptic_ulcer -
cox_ipw-cohort_prevax-main-peptic_ulcer -
make_model_input-cohort_prevax-main-upper_gi_bleeding -
cox_ipw-cohort_prevax-main-upper_gi_bleeding -
make_model_input-cohort_prevax-main-variceal_gi_bleeding -
cox_ipw-cohort_prevax-main-variceal_gi_bleeding -
make_model_input-cohort_unvax-main-acute_pancreatitis -
cox_ipw-cohort_unvax-main-acute_pancreatitis -
make_model_input-cohort_unvax-main-appendicitis -
cox_ipw-cohort_unvax-main-appendicitis -
make_model_input-cohort_unvax-main-dyspepsia -
cox_ipw-cohort_unvax-main-dyspepsia -
make_model_input-cohort_unvax-main-gallstones_disease -
cox_ipw-cohort_unvax-main-gallstones_disease -
make_model_input-cohort_unvax-main-gastro_oesophageal_reflux_disease -
cox_ipw-cohort_unvax-main-gastro_oesophageal_reflux_disease -
make_model_input-cohort_unvax-main-ibs -
cox_ipw-cohort_unvax-main-ibs -
make_model_input-cohort_unvax-main-lower_gi_bleeding -
cox_ipw-cohort_unvax-main-lower_gi_bleeding -
make_model_input-cohort_unvax-main-nonalcoholic_steatohepatitis -
cox_ipw-cohort_unvax-main-nonalcoholic_steatohepatitis -
make_model_input-cohort_unvax-main-nonvariceal_gi_bleeding -
cox_ipw-cohort_unvax-main-nonvariceal_gi_bleeding -
make_model_input-cohort_unvax-main-peptic_ulcer -
cox_ipw-cohort_unvax-main-peptic_ulcer -
make_model_input-cohort_unvax-main-upper_gi_bleeding -
cox_ipw-cohort_unvax-main-upper_gi_bleeding -
make_model_input-cohort_unvax-main-variceal_gi_bleeding -
cox_ipw-cohort_unvax-main-variceal_gi_bleeding -
make_model_input-cohort_vax-main-acute_pancreatitis -
cox_ipw-cohort_vax-main-acute_pancreatitis -
make_model_input-cohort_vax-main-appendicitis -
cox_ipw-cohort_vax-main-appendicitis -
make_model_input-cohort_vax-main-dyspepsia -
cox_ipw-cohort_vax-main-dyspepsia -
make_model_input-cohort_vax-main-gallstones_disease -
cox_ipw-cohort_vax-main-gallstones_disease -
make_model_input-cohort_vax-main-gastro_oesophageal_reflux_disease -
cox_ipw-cohort_vax-main-gastro_oesophageal_reflux_disease -
make_model_input-cohort_vax-main-ibs -
cox_ipw-cohort_vax-main-ibs -
make_model_input-cohort_vax-main-lower_gi_bleeding -
cox_ipw-cohort_vax-main-lower_gi_bleeding -
make_model_input-cohort_vax-main-nonalcoholic_steatohepatitis -
cox_ipw-cohort_vax-main-nonalcoholic_steatohepatitis -
make_model_input-cohort_vax-main-nonvariceal_gi_bleeding -
cox_ipw-cohort_vax-main-nonvariceal_gi_bleeding -
make_model_input-cohort_vax-main-peptic_ulcer -
cox_ipw-cohort_vax-main-peptic_ulcer -
make_model_input-cohort_vax-main-upper_gi_bleeding -
cox_ipw-cohort_vax-main-upper_gi_bleeding -
make_model_input-cohort_vax-main-variceal_gi_bleeding -
cox_ipw-cohort_vax-main-variceal_gi_bleeding
-
Code comparison
Compare the code used in this job request