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Job request: 19213

Organisation:
University of Bristol
Workspace:
post-covid-gastrointestina-extf
ID:
rsjkkmlkfbdwdkrt
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Marwa Al Arab requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    preprocess_data_unvax
    Status:
    Succeeded
    Job identifier:
    2lgaujvxv5yskcg5
  • Action:
    stage1_data_cleaning_unvax
    Status:
    Succeeded
    Job identifier:
    yrr3qhgycwnmthkg
  • Action:
    make_model_input-cohort_unvax-main-nonalcoholic_steatohepatitis
    Status:
    Failed
    Job identifier:
    2kkbol2axmubup3x
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    make_model_input-cohort_unvax-main-peptic_ulcer
    Status:
    Failed
    Job identifier:
    kwrwfefwhz77qwv4
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    make_model_input-cohort_unvax-main-upper_gi_bleeding
    Status:
    Failed
    Job identifier:
    qis2yqw7a3wl3jh7
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    make_model_input-cohort_unvax-main-variceal_gi_bleeding
    Status:
    Failed
    Job identifier:
    sdbmkilginsb6wub
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    cox_ipw-cohort_unvax-main-nonalcoholic_steatohepatitis
    Status:
    Failed
    Job identifier:
    axdhtpzczcmpzpm7
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_ipw-cohort_unvax-main-upper_gi_bleeding
    Status:
    Failed
    Job identifier:
    uo6iy277jeyvw6cd
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_ipw-cohort_unvax-main-variceal_gi_bleeding
    Status:
    Failed
    Job identifier:
    52r46m6uetdfnokz
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 02:23:54

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-gastrointestina-extf
Requested by
Marwa Al Arab
Branch
main
Force run dependencies
No
Git commit hash
59434a9
Requested actions
  • preprocess_data_unvax
  • stage1_data_cleaning_unvax
  • make_model_input-cohort_unvax-main-nonalcoholic_steatohepatitis
  • cox_ipw-cohort_unvax-main-nonalcoholic_steatohepatitis
  • make_model_input-cohort_unvax-main-peptic_ulcer
  • make_model_input-cohort_unvax-main-upper_gi_bleeding
  • cox_ipw-cohort_unvax-main-upper_gi_bleeding
  • make_model_input-cohort_unvax-main-variceal_gi_bleeding
  • cox_ipw-cohort_unvax-main-variceal_gi_bleeding

Code comparison

Compare the code used in this job request