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Job request: 19222

Organisation:
University of Bristol
Workspace:
post-covid-gastrointestina-extf
ID:
iv2qnzytpmc5oxgi
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Marwa Al Arab requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    preprocess_data_unvax
    Status:
    Succeeded
    Job identifier:
    zipsximqn3ted7kz
  • Action:
    stage1_data_cleaning_unvax
    Status:
    Succeeded
    Job identifier:
    ysedn3rhqeaw7vs2
  • Action:
    make_model_input-cohort_unvax-main-nonalcoholic_steatohepatitis
    Status:
    Failed
    Job identifier:
    7x4lj5heaysdkuum
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    make_model_input-cohort_unvax-main-peptic_ulcer
    Status:
    Failed
    Job identifier:
    3oxkxahd3dibvvlo
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    make_model_input-cohort_unvax-main-upper_gi_bleeding
    Status:
    Failed
    Job identifier:
    gul6ppc67th2lhzm
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    make_model_input-cohort_unvax-main-variceal_gi_bleeding
    Status:
    Failed
    Job identifier:
    ar3r4snqtkvhoyai
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    table1_unvax
    Status:
    Succeeded
    Job identifier:
    maj336gniyaoephs
  • Action:
    cox_ipw-cohort_unvax-main-nonalcoholic_steatohepatitis
    Status:
    Failed
    Job identifier:
    aulsuqyrw2prtyh6
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_ipw-cohort_unvax-main-peptic_ulcer
    Status:
    Failed
    Job identifier:
    sa74sm7g3i6xq62z
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_ipw-cohort_unvax-main-upper_gi_bleeding
    Status:
    Failed
    Job identifier:
    lemz37kcfht46ykw
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    cox_ipw-cohort_unvax-main-variceal_gi_bleeding
    Status:
    Failed
    Job identifier:
    ow7yh477y33d75zg
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 02:29:57

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-gastrointestina-extf
Requested by
Marwa Al Arab
Branch
main
Force run dependencies
No
Git commit hash
ae3284f
Requested actions
  • preprocess_data_unvax
  • stage1_data_cleaning_unvax
  • table1_unvax
  • make_model_input-cohort_unvax-main-nonalcoholic_steatohepatitis
  • cox_ipw-cohort_unvax-main-nonalcoholic_steatohepatitis
  • make_model_input-cohort_unvax-main-peptic_ulcer
  • cox_ipw-cohort_unvax-main-peptic_ulcer
  • make_model_input-cohort_unvax-main-upper_gi_bleeding
  • cox_ipw-cohort_unvax-main-upper_gi_bleeding
  • make_model_input-cohort_unvax-main-variceal_gi_bleeding
  • cox_ipw-cohort_unvax-main-variceal_gi_bleeding

Code comparison

Compare the code used in this job request