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Job request: 14397

Organisation:
University of Bristol
Workspace:
post-covid-gastrointestinal
ID:
lfktjtpit4y64dph
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Marwa Al Arab requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population_prelim
    Status:
    Succeeded
    Job identifier:
    3ctmrwpvqt4ukrpr
  • Action:
    generate_index_dates
    Status:
    Succeeded
    Job identifier:
    iiwnija4znaqp2jz
  • Action:
    generate_study_population_prevax
    Status:
    Failed
    Job identifier:
    7xbtvgdbg5h35tpv
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_vax
    Status:
    Failed
    Job identifier:
    2fvzzh4bqs23sr63
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_study_population_unvax
    Status:
    Failed
    Job identifier:
    sbjvtlb3sq5ittqd
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    preprocess_data_vax
    Status:
    Failed
    Job identifier:
    dtient4yrr47fx3n
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    preprocess_data_unvax
    Status:
    Failed
    Job identifier:
    rwyszsdn74wj2ysl
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage1_data_cleaning_all
    Status:
    Failed
    Job identifier:
    fb7gl7ytxh23trdk
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    preprocess_data_prevax
    Status:
    Failed
    Job identifier:
    dewemz3cj6ul2a5k
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 117:55:29

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-gastrointestinal
Requested by
Marwa Al Arab
Branch
main
Force run dependencies
No
Git commit hash
1df3522
Requested actions
  • generate_study_population_prelim
  • generate_index_dates
  • generate_study_population_prevax
  • generate_study_population_vax
  • generate_study_population_unvax
  • preprocess_data_prevax
  • preprocess_data_vax
  • preprocess_data_unvax
  • stage1_data_cleaning_all

Code comparison

Compare the code used in this job request