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Job request: 16541

Organisation:
University of Bristol
Workspace:
post-covid-respiratory-extended-followup
ID:
qasudshtg6ornqgg

This page shows the technical details of what happened when the authorised researcher Alex Whitmarsh requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 300:34:12

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Failed
Backend
TPP
Requested by
Alex Whitmarsh
Branch
main
Force run dependencies
No
Git commit hash
4447d28
Requested actions
  • vax_eligibility_inputs
  • generate_study_population_prelim
  • generate_index_dates
  • generate_study_population_prevax
  • generate_study_population_vax
  • generate_study_population_unvax
  • preprocess_data_prevax
  • preprocess_data_vax
  • preprocess_data_unvax
  • stage1_data_cleaning_all
  • describe_file-input_prevax_stage1
  • describe_file-input_vax_stage1
  • describe_file-input_unvax_stage1
  • make_model_input-cohort_prevax-main-asthma_exac-no_preexisting
  • cox_ipw-cohort_prevax-main-asthma_exac-no_preexisting
  • make_model_input-cohort_prevax-main-asthma_exac-preexisting
  • cox_ipw-cohort_prevax-main-asthma_exac-preexisting
  • make_model_input-cohort_prevax-main-breathless-no_preexisting
  • cox_ipw-cohort_prevax-main-breathless-no_preexisting
  • make_model_input-cohort_prevax-main-breathless-preexisting
  • cox_ipw-cohort_prevax-main-breathless-preexisting
  • make_model_input-cohort_prevax-main-copd_exac-no_preexisting
  • cox_ipw-cohort_prevax-main-copd_exac-no_preexisting
  • make_model_input-cohort_prevax-main-copd_exac-preexisting
  • cox_ipw-cohort_prevax-main-copd_exac-preexisting
  • make_model_input-cohort_prevax-main-cough-no_preexisting
  • cox_ipw-cohort_prevax-main-cough-no_preexisting
  • make_model_input-cohort_prevax-main-cough-preexisting
  • cox_ipw-cohort_prevax-main-cough-preexisting
  • make_model_input-cohort_prevax-main-pneumonia-no_preexisting
  • cox_ipw-cohort_prevax-main-pneumonia-no_preexisting
  • make_model_input-cohort_prevax-main-pneumonia-preexisting
  • cox_ipw-cohort_prevax-main-pneumonia-preexisting
  • make_model_input-cohort_prevax-main-pulmonary_fibrosis-no_preexisting
  • cox_ipw-cohort_prevax-main-pulmonary_fibrosis-no_preexisting
  • make_model_input-cohort_prevax-main-pulmonary_fibrosis-preexisting
  • cox_ipw-cohort_prevax-main-pulmonary_fibrosis-preexisting
  • make_model_input-cohort_prevax-main-urti-no_preexisting
  • cox_ipw-cohort_prevax-main-urti-no_preexisting
  • make_model_input-cohort_prevax-main-urti-preexisting
  • cox_ipw-cohort_prevax-main-urti-preexisting
  • make_model_input-cohort_unvax-main-asthma_exac-no_preexisting
  • cox_ipw-cohort_unvax-main-asthma_exac-no_preexisting
  • make_model_input-cohort_unvax-main-asthma_exac-preexisting
  • cox_ipw-cohort_unvax-main-asthma_exac-preexisting
  • make_model_input-cohort_unvax-main-breathless-no_preexisting
  • cox_ipw-cohort_unvax-main-breathless-no_preexisting
  • make_model_input-cohort_unvax-main-breathless-preexisting
  • cox_ipw-cohort_unvax-main-breathless-preexisting
  • make_model_input-cohort_unvax-main-copd_exac-no_preexisting
  • cox_ipw-cohort_unvax-main-copd_exac-no_preexisting
  • make_model_input-cohort_unvax-main-copd_exac-preexisting
  • cox_ipw-cohort_unvax-main-copd_exac-preexisting
  • make_model_input-cohort_unvax-main-cough-no_preexisting
  • cox_ipw-cohort_unvax-main-cough-no_preexisting
  • make_model_input-cohort_unvax-main-cough-preexisting
  • cox_ipw-cohort_unvax-main-cough-preexisting
  • make_model_input-cohort_unvax-main-pneumonia-no_preexisting
  • cox_ipw-cohort_unvax-main-pneumonia-no_preexisting
  • make_model_input-cohort_unvax-main-pneumonia-preexisting
  • cox_ipw-cohort_unvax-main-pneumonia-preexisting
  • make_model_input-cohort_unvax-main-pulmonary_fibrosis-no_preexisting
  • cox_ipw-cohort_unvax-main-pulmonary_fibrosis-no_preexisting
  • make_model_input-cohort_unvax-main-pulmonary_fibrosis-preexisting
  • cox_ipw-cohort_unvax-main-pulmonary_fibrosis-preexisting
  • make_model_input-cohort_unvax-main-urti-no_preexisting
  • cox_ipw-cohort_unvax-main-urti-no_preexisting
  • make_model_input-cohort_unvax-main-urti-preexisting
  • cox_ipw-cohort_unvax-main-urti-preexisting
  • make_model_input-cohort_vax-main-asthma_exac-no_preexisting
  • cox_ipw-cohort_vax-main-asthma_exac-no_preexisting
  • make_model_input-cohort_vax-main-asthma_exac-preexisting
  • cox_ipw-cohort_vax-main-asthma_exac-preexisting
  • make_model_input-cohort_vax-main-breathless-no_preexisting
  • cox_ipw-cohort_vax-main-breathless-no_preexisting
  • make_model_input-cohort_vax-main-breathless-preexisting
  • cox_ipw-cohort_vax-main-breathless-preexisting
  • make_model_input-cohort_vax-main-copd_exac-no_preexisting
  • cox_ipw-cohort_vax-main-copd_exac-no_preexisting
  • make_model_input-cohort_vax-main-copd_exac-preexisting
  • cox_ipw-cohort_vax-main-copd_exac-preexisting
  • make_model_input-cohort_vax-main-cough-no_preexisting
  • cox_ipw-cohort_vax-main-cough-no_preexisting
  • make_model_input-cohort_vax-main-cough-preexisting
  • cox_ipw-cohort_vax-main-cough-preexisting
  • make_model_input-cohort_vax-main-pneumonia-no_preexisting
  • cox_ipw-cohort_vax-main-pneumonia-no_preexisting
  • make_model_input-cohort_vax-main-pneumonia-preexisting
  • cox_ipw-cohort_vax-main-pneumonia-preexisting
  • make_model_input-cohort_vax-main-pulmonary_fibrosis-no_preexisting
  • cox_ipw-cohort_vax-main-pulmonary_fibrosis-no_preexisting
  • make_model_input-cohort_vax-main-pulmonary_fibrosis-preexisting
  • cox_ipw-cohort_vax-main-pulmonary_fibrosis-preexisting
  • make_model_input-cohort_vax-main-urti-no_preexisting
  • cox_ipw-cohort_vax-main-urti-no_preexisting
  • make_model_input-cohort_vax-main-urti-preexisting
  • cox_ipw-cohort_vax-main-urti-preexisting
  • make_model_input-cohort_prevax-sub_covid_hospitalised-asthma_exac-no_preexisting
  • cox_ipw-cohort_prevax-sub_covid_hospitalised-asthma_exac-no_preexisting
  • make_model_input-cohort_prevax-sub_covid_hospitalised-asthma_exac-preexisting
  • cox_ipw-cohort_prevax-sub_covid_hospitalised-asthma_exac-preexisting
  • make_model_input-cohort_prevax-sub_covid_hospitalised-breathless-no_preexisting
  • cox_ipw-cohort_prevax-sub_covid_hospitalised-breathless-no_preexisting
  • make_model_input-cohort_prevax-sub_covid_hospitalised-breathless-preexisting
  • cox_ipw-cohort_prevax-sub_covid_hospitalised-breathless-preexisting
  • make_model_input-cohort_prevax-sub_covid_hospitalised-copd_exac-no_preexisting
  • cox_ipw-cohort_prevax-sub_covid_hospitalised-copd_exac-no_preexisting
  • make_model_input-cohort_prevax-sub_covid_hospitalised-copd_exac-preexisting
  • cox_ipw-cohort_prevax-sub_covid_hospitalised-copd_exac-preexisting
  • make_model_input-cohort_prevax-sub_covid_hospitalised-cough-no_preexisting
  • cox_ipw-cohort_prevax-sub_covid_hospitalised-cough-no_preexisting
  • make_model_input-cohort_prevax-sub_covid_hospitalised-cough-preexisting
  • cox_ipw-cohort_prevax-sub_covid_hospitalised-cough-preexisting
  • make_model_input-cohort_prevax-sub_covid_hospitalised-pneumonia-no_preexisting
  • cox_ipw-cohort_prevax-sub_covid_hospitalised-pneumonia-no_preexisting
  • make_model_input-cohort_prevax-sub_covid_hospitalised-pneumonia-preexisting
  • cox_ipw-cohort_prevax-sub_covid_hospitalised-pneumonia-preexisting
  • make_model_input-cohort_prevax-sub_covid_hospitalised-pulmonary_fibrosis-no_preexisting
  • cox_ipw-cohort_prevax-sub_covid_hospitalised-pulmonary_fibrosis-no_preexisting
  • make_model_input-cohort_prevax-sub_covid_hospitalised-pulmonary_fibrosis-preexisting
  • cox_ipw-cohort_prevax-sub_covid_hospitalised-pulmonary_fibrosis-preexisting
  • make_model_input-cohort_prevax-sub_covid_hospitalised-urti-no_preexisting
  • cox_ipw-cohort_prevax-sub_covid_hospitalised-urti-no_preexisting
  • make_model_input-cohort_prevax-sub_covid_hospitalised-urti-preexisting
  • cox_ipw-cohort_prevax-sub_covid_hospitalised-urti-preexisting
  • make_model_input-cohort_unvax-sub_covid_hospitalised-asthma_exac-no_preexisting
  • cox_ipw-cohort_unvax-sub_covid_hospitalised-asthma_exac-no_preexisting
  • make_model_input-cohort_unvax-sub_covid_hospitalised-asthma_exac-preexisting
  • cox_ipw-cohort_unvax-sub_covid_hospitalised-asthma_exac-preexisting
  • make_model_input-cohort_unvax-sub_covid_hospitalised-breathless-no_preexisting
  • cox_ipw-cohort_unvax-sub_covid_hospitalised-breathless-no_preexisting
  • make_model_input-cohort_unvax-sub_covid_hospitalised-breathless-preexisting
  • cox_ipw-cohort_unvax-sub_covid_hospitalised-breathless-preexisting
  • make_model_input-cohort_unvax-sub_covid_hospitalised-copd_exac-no_preexisting
  • cox_ipw-cohort_unvax-sub_covid_hospitalised-copd_exac-no_preexisting
  • make_model_input-cohort_unvax-sub_covid_hospitalised-copd_exac-preexisting
  • cox_ipw-cohort_unvax-sub_covid_hospitalised-copd_exac-preexisting
  • make_model_input-cohort_unvax-sub_covid_hospitalised-cough-no_preexisting
  • cox_ipw-cohort_unvax-sub_covid_hospitalised-cough-no_preexisting
  • make_model_input-cohort_unvax-sub_covid_hospitalised-cough-preexisting
  • cox_ipw-cohort_unvax-sub_covid_hospitalised-cough-preexisting
  • make_model_input-cohort_unvax-sub_covid_hospitalised-pneumonia-no_preexisting
  • cox_ipw-cohort_unvax-sub_covid_hospitalised-pneumonia-no_preexisting
  • make_model_input-cohort_unvax-sub_covid_hospitalised-pneumonia-preexisting
  • cox_ipw-cohort_unvax-sub_covid_hospitalised-pneumonia-preexisting
  • make_model_input-cohort_unvax-sub_covid_hospitalised-pulmonary_fibrosis-no_preexisting
  • cox_ipw-cohort_unvax-sub_covid_hospitalised-pulmonary_fibrosis-no_preexisting
  • make_model_input-cohort_unvax-sub_covid_hospitalised-pulmonary_fibrosis-preexisting
  • cox_ipw-cohort_unvax-sub_covid_hospitalised-pulmonary_fibrosis-preexisting
  • make_model_input-cohort_unvax-sub_covid_hospitalised-urti-no_preexisting
  • cox_ipw-cohort_unvax-sub_covid_hospitalised-urti-no_preexisting
  • make_model_input-cohort_unvax-sub_covid_hospitalised-urti-preexisting
  • cox_ipw-cohort_unvax-sub_covid_hospitalised-urti-preexisting
  • make_model_input-cohort_vax-sub_covid_hospitalised-asthma_exac-no_preexisting
  • cox_ipw-cohort_vax-sub_covid_hospitalised-asthma_exac-no_preexisting
  • make_model_input-cohort_vax-sub_covid_hospitalised-asthma_exac-preexisting
  • cox_ipw-cohort_vax-sub_covid_hospitalised-asthma_exac-preexisting
  • make_model_input-cohort_vax-sub_covid_hospitalised-breathless-no_preexisting
  • cox_ipw-cohort_vax-sub_covid_hospitalised-breathless-no_preexisting
  • make_model_input-cohort_vax-sub_covid_hospitalised-breathless-preexisting
  • cox_ipw-cohort_vax-sub_covid_hospitalised-breathless-preexisting
  • make_model_input-cohort_vax-sub_covid_hospitalised-copd_exac-no_preexisting
  • cox_ipw-cohort_vax-sub_covid_hospitalised-copd_exac-no_preexisting
  • make_model_input-cohort_vax-sub_covid_hospitalised-copd_exac-preexisting
  • cox_ipw-cohort_vax-sub_covid_hospitalised-copd_exac-preexisting
  • make_model_input-cohort_vax-sub_covid_hospitalised-cough-no_preexisting
  • cox_ipw-cohort_vax-sub_covid_hospitalised-cough-no_preexisting
  • make_model_input-cohort_vax-sub_covid_hospitalised-cough-preexisting
  • cox_ipw-cohort_vax-sub_covid_hospitalised-cough-preexisting
  • make_model_input-cohort_vax-sub_covid_hospitalised-pneumonia-no_preexisting
  • cox_ipw-cohort_vax-sub_covid_hospitalised-pneumonia-no_preexisting
  • make_model_input-cohort_vax-sub_covid_hospitalised-pneumonia-preexisting
  • cox_ipw-cohort_vax-sub_covid_hospitalised-pneumonia-preexisting
  • make_model_input-cohort_vax-sub_covid_hospitalised-pulmonary_fibrosis-no_preexisting
  • cox_ipw-cohort_vax-sub_covid_hospitalised-pulmonary_fibrosis-no_preexisting
  • make_model_input-cohort_vax-sub_covid_hospitalised-pulmonary_fibrosis-preexisting
  • cox_ipw-cohort_vax-sub_covid_hospitalised-pulmonary_fibrosis-preexisting
  • make_model_input-cohort_vax-sub_covid_hospitalised-urti-no_preexisting
  • cox_ipw-cohort_vax-sub_covid_hospitalised-urti-no_preexisting
  • make_model_input-cohort_vax-sub_covid_hospitalised-urti-preexisting
  • cox_ipw-cohort_vax-sub_covid_hospitalised-urti-preexisting
  • make_model_input-cohort_prevax-sub_covid_nonhospitalised-asthma_exac-no_preexisting
  • cox_ipw-cohort_prevax-sub_covid_nonhospitalised-asthma_exac-no_preexisting
  • make_model_input-cohort_prevax-sub_covid_nonhospitalised-asthma_exac-preexisting
  • cox_ipw-cohort_prevax-sub_covid_nonhospitalised-asthma_exac-preexisting
  • make_model_input-cohort_prevax-sub_covid_nonhospitalised-breathless-no_preexisting
  • cox_ipw-cohort_prevax-sub_covid_nonhospitalised-breathless-no_preexisting
  • make_model_input-cohort_prevax-sub_covid_nonhospitalised-breathless-preexisting
  • cox_ipw-cohort_prevax-sub_covid_nonhospitalised-breathless-preexisting
  • make_model_input-cohort_prevax-sub_covid_nonhospitalised-copd_exac-no_preexisting
  • cox_ipw-cohort_prevax-sub_covid_nonhospitalised-copd_exac-no_preexisting
  • make_model_input-cohort_prevax-sub_covid_nonhospitalised-copd_exac-preexisting
  • cox_ipw-cohort_prevax-sub_covid_nonhospitalised-copd_exac-preexisting
  • make_model_input-cohort_prevax-sub_covid_nonhospitalised-cough-no_preexisting
  • cox_ipw-cohort_prevax-sub_covid_nonhospitalised-cough-no_preexisting
  • make_model_input-cohort_prevax-sub_covid_nonhospitalised-cough-preexisting
  • cox_ipw-cohort_prevax-sub_covid_nonhospitalised-cough-preexisting
  • make_model_input-cohort_prevax-sub_covid_nonhospitalised-pneumonia-no_preexisting
  • cox_ipw-cohort_prevax-sub_covid_nonhospitalised-pneumonia-no_preexisting
  • make_model_input-cohort_prevax-sub_covid_nonhospitalised-pneumonia-preexisting
  • cox_ipw-cohort_prevax-sub_covid_nonhospitalised-pneumonia-preexisting
  • make_model_input-cohort_prevax-sub_covid_nonhospitalised-pulmonary_fibrosis-no_preexisting
  • cox_ipw-cohort_prevax-sub_covid_nonhospitalised-pulmonary_fibrosis-no_preexisting
  • make_model_input-cohort_prevax-sub_covid_nonhospitalised-pulmonary_fibrosis-preexisting
  • cox_ipw-cohort_prevax-sub_covid_nonhospitalised-pulmonary_fibrosis-preexisting
  • make_model_input-cohort_prevax-sub_covid_nonhospitalised-urti-no_preexisting
  • cox_ipw-cohort_prevax-sub_covid_nonhospitalised-urti-no_preexisting
  • make_model_input-cohort_prevax-sub_covid_nonhospitalised-urti-preexisting
  • cox_ipw-cohort_prevax-sub_covid_nonhospitalised-urti-preexisting
  • make_model_input-cohort_unvax-sub_covid_nonhospitalised-asthma_exac-no_preexisting
  • cox_ipw-cohort_unvax-sub_covid_nonhospitalised-asthma_exac-no_preexisting
  • make_model_input-cohort_unvax-sub_covid_nonhospitalised-asthma_exac-preexisting
  • cox_ipw-cohort_unvax-sub_covid_nonhospitalised-asthma_exac-preexisting
  • make_model_input-cohort_unvax-sub_covid_nonhospitalised-breathless-no_preexisting
  • cox_ipw-cohort_unvax-sub_covid_nonhospitalised-breathless-no_preexisting
  • make_model_input-cohort_unvax-sub_covid_nonhospitalised-breathless-preexisting
  • cox_ipw-cohort_unvax-sub_covid_nonhospitalised-breathless-preexisting
  • make_model_input-cohort_unvax-sub_covid_nonhospitalised-copd_exac-no_preexisting
  • cox_ipw-cohort_unvax-sub_covid_nonhospitalised-copd_exac-no_preexisting
  • make_model_input-cohort_unvax-sub_covid_nonhospitalised-copd_exac-preexisting
  • cox_ipw-cohort_unvax-sub_covid_nonhospitalised-copd_exac-preexisting
  • make_model_input-cohort_unvax-sub_covid_nonhospitalised-cough-no_preexisting
  • cox_ipw-cohort_unvax-sub_covid_nonhospitalised-cough-no_preexisting
  • make_model_input-cohort_unvax-sub_covid_nonhospitalised-cough-preexisting
  • cox_ipw-cohort_unvax-sub_covid_nonhospitalised-cough-preexisting
  • make_model_input-cohort_unvax-sub_covid_nonhospitalised-pneumonia-no_preexisting
  • cox_ipw-cohort_unvax-sub_covid_nonhospitalised-pneumonia-no_preexisting
  • make_model_input-cohort_unvax-sub_covid_nonhospitalised-pneumonia-preexisting
  • cox_ipw-cohort_unvax-sub_covid_nonhospitalised-pneumonia-preexisting
  • make_model_input-cohort_unvax-sub_covid_nonhospitalised-pulmonary_fibrosis-no_preexisting
  • cox_ipw-cohort_unvax-sub_covid_nonhospitalised-pulmonary_fibrosis-no_preexisting
  • make_model_input-cohort_unvax-sub_covid_nonhospitalised-pulmonary_fibrosis-preexisting
  • cox_ipw-cohort_unvax-sub_covid_nonhospitalised-pulmonary_fibrosis-preexisting
  • make_model_input-cohort_unvax-sub_covid_nonhospitalised-urti-no_preexisting
  • cox_ipw-cohort_unvax-sub_covid_nonhospitalised-urti-no_preexisting
  • make_model_input-cohort_unvax-sub_covid_nonhospitalised-urti-preexisting
  • cox_ipw-cohort_unvax-sub_covid_nonhospitalised-urti-preexisting
  • make_model_input-cohort_vax-sub_covid_nonhospitalised-asthma_exac-no_preexisting
  • cox_ipw-cohort_vax-sub_covid_nonhospitalised-asthma_exac-no_preexisting
  • make_model_input-cohort_vax-sub_covid_nonhospitalised-asthma_exac-preexisting
  • cox_ipw-cohort_vax-sub_covid_nonhospitalised-asthma_exac-preexisting
  • make_model_input-cohort_vax-sub_covid_nonhospitalised-breathless-no_preexisting
  • cox_ipw-cohort_vax-sub_covid_nonhospitalised-breathless-no_preexisting
  • make_model_input-cohort_vax-sub_covid_nonhospitalised-breathless-preexisting
  • cox_ipw-cohort_vax-sub_covid_nonhospitalised-breathless-preexisting
  • make_model_input-cohort_vax-sub_covid_nonhospitalised-copd_exac-no_preexisting
  • cox_ipw-cohort_vax-sub_covid_nonhospitalised-copd_exac-no_preexisting
  • make_model_input-cohort_vax-sub_covid_nonhospitalised-copd_exac-preexisting
  • cox_ipw-cohort_vax-sub_covid_nonhospitalised-copd_exac-preexisting
  • make_model_input-cohort_vax-sub_covid_nonhospitalised-cough-no_preexisting
  • cox_ipw-cohort_vax-sub_covid_nonhospitalised-cough-no_preexisting
  • make_model_input-cohort_vax-sub_covid_nonhospitalised-cough-preexisting
  • cox_ipw-cohort_vax-sub_covid_nonhospitalised-cough-preexisting
  • make_model_input-cohort_vax-sub_covid_nonhospitalised-pneumonia-no_preexisting
  • cox_ipw-cohort_vax-sub_covid_nonhospitalised-pneumonia-no_preexisting
  • make_model_input-cohort_vax-sub_covid_nonhospitalised-pneumonia-preexisting
  • cox_ipw-cohort_vax-sub_covid_nonhospitalised-pneumonia-preexisting
  • make_model_input-cohort_vax-sub_covid_nonhospitalised-pulmonary_fibrosis-no_preexisting
  • cox_ipw-cohort_vax-sub_covid_nonhospitalised-pulmonary_fibrosis-no_preexisting
  • make_model_input-cohort_vax-sub_covid_nonhospitalised-pulmonary_fibrosis-preexisting
  • cox_ipw-cohort_vax-sub_covid_nonhospitalised-pulmonary_fibrosis-preexisting
  • make_model_input-cohort_vax-sub_covid_nonhospitalised-urti-no_preexisting
  • cox_ipw-cohort_vax-sub_covid_nonhospitalised-urti-no_preexisting
  • make_model_input-cohort_vax-sub_covid_nonhospitalised-urti-preexisting
  • cox_ipw-cohort_vax-sub_covid_nonhospitalised-urti-preexisting

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