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Job request: 17239

Organisation:
University of Bristol
Workspace:
post-covid-respiratory-extended-followup
ID:
yapqpdjjjenk5uwv
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Alex Whitmarsh requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population_vax
    Status:
    Succeeded
    Job identifier:
    vaunqesg3k3wkmgx
  • Action:
    generate_study_population_unvax
    Status:
    Failed
    Job identifier:
    35znx5oxmg2e7pnt
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    generate_study_population_prevax
    Status:
    Failed
    Job identifier:
    y5mfcaynbis5uwmv
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    preprocess_data_vax
    Status:
    Succeeded
    Job identifier:
    vlhshztzz3a4dyio
  • Action:
    preprocess_data_unvax
    Status:
    Failed
    Job identifier:
    zvd7oh2fhen26dwv
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    describe_file-input_prevax_stage1
    Status:
    Failed
    Job identifier:
    ykc4cmntecn34uwh
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage1_data_cleaning_all
    Status:
    Failed
    Job identifier:
    ghezmjpzasffhfxz
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    describe_file-input_unvax_stage1
    Status:
    Failed
    Job identifier:
    u2gy3xzn7s4hwroy
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    describe_file-input_vax_stage1
    Status:
    Failed
    Job identifier:
    cyx4d5qx65cm7dcj
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    preprocess_data_prevax
    Status:
    Failed
    Job identifier:
    vdnckfzttnvpkje7
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 24:28:45

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-respiratory-extended-followup
Requested by
Alex Whitmarsh
Branch
main
Force run dependencies
No
Git commit hash
ad05a26
Requested actions
  • generate_study_population_prevax
  • generate_study_population_vax
  • generate_study_population_unvax
  • preprocess_data_prevax
  • preprocess_data_vax
  • preprocess_data_unvax
  • stage1_data_cleaning_all
  • describe_file-input_prevax_stage1
  • describe_file-input_vax_stage1
  • describe_file-input_unvax_stage1

Code comparison

Compare the code used in this job request