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Job request: 15839

Organisation:
University of Bristol
Workspace:
post-covid-respiratory
ID:
4jfkvsn2l3opebhq
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Alex Whitmarsh requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    vax_eligibility_inputs
    Status:
    Status: Succeeded
    Job identifier:
    k66lf4oie3fgyyww
  • Action:
    generate_study_population_prelim
    Status:
    Status: Succeeded
    Job identifier:
    iybhxtl4lacjabdd
  • Action:
    generate_index_dates
    Status:
    Status: Succeeded
    Job identifier:
    2pyimblzccak36lo
  • Action:
    generate_study_population_prevax
    Status:
    Status: Failed
    Job identifier:
    amfg7osicsvusway
    Error:
    nonzero_exit: Job exited with an error: A transient database error occurred, your job may run if you try it again, if it keeps failing then contact tech support
  • Action:
    generate_study_population_vax
    Status:
    Status: Failed
    Job identifier:
    uglk6upzjhbqzlle
    Error:
    nonzero_exit: Job exited with an error: A transient database error occurred, your job may run if you try it again, if it keeps failing then contact tech support
  • Action:
    generate_study_population_unvax
    Status:
    Status: Failed
    Job identifier:
    gh3gokvmwtoeu34z
    Error:
    nonzero_exit: Job exited with an error: A transient database error occurred, your job may run if you try it again, if it keeps failing then contact tech support
  • Action:
    stage1_data_cleaning_all
    Status:
    Status: Failed
    Job identifier:
    flo6ghkij7y57hlt
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    preprocess_data_vax
    Status:
    Status: Failed
    Job identifier:
    m6w7dw5lj7xb7ql7
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    preprocess_data_unvax
    Status:
    Status: Failed
    Job identifier:
    rucz6x746zk4bm2v
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    preprocess_data_prevax
    Status:
    Status: Failed
    Job identifier:
    uam3gnzsgmk4mtco
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 18:32:45

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-respiratory
Requested by
Alex Whitmarsh
Branch
main
Force run dependencies
Yes
Git commit hash
8527534
Requested actions
  • vax_eligibility_inputs
  • generate_study_population_prelim
  • generate_index_dates
  • generate_study_population_prevax
  • generate_study_population_vax
  • generate_study_population_unvax
  • preprocess_data_prevax
  • preprocess_data_vax
  • preprocess_data_unvax
  • stage1_data_cleaning_all

Code comparison

Compare the code used in this job request