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Job request: 5976

Organisation:
University of Bristol
Workspace:
post-covid-vaccinated
ID:
uwgiohgxbiz4omek
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Rochelle Knight requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population_electively_unvaccinated
    Status:
    Succeeded
    Job identifier:
    v6m65umzmoqzy6mf
  • Action:
    generate_study_population_index
    Status:
    Succeeded
    Job identifier:
    x5kckbjf7upl2uhr
  • Action:
    generate_study_population_vaccinated
    Status:
    Succeeded
    Job identifier:
    td2q425kwaier3rz
  • Action:
    preprocess_data
    Status:
    Succeeded
    Job identifier:
    qwrcdyvhs3yzimit
  • Action:
    stage1_data_cleaning_both
    Status:
    Succeeded
    Job identifier:
    4i6dga33u2it3dud
  • Action:
    Analysis_cox_stroke_sah_hs
    Status:
    Failed
    Job identifier:
    nbdzwubivrgeau4g
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    Analysis_cox_tia
    Status:
    Succeeded
    Job identifier:
    fz2y5aghorex3g7d
  • Action:
    stage4_venn_diagram_both
    Status:
    Succeeded
    Job identifier:
    wqi7adjawczcyn5z
  • Action:
    stage4_table2_both
    Status:
    Succeeded
    Job identifier:
    6r3m6t5dqbfiwl2r
  • Action:
    Analysis_cox_ami
    Status:
    Succeeded
    Job identifier:
    maf6jvsi2ixz5tmq
  • Action:
    Analysis_cox_dvt
    Status:
    Succeeded
    Job identifier:
    ieagpcc7g7l5wzqp
  • Action:
    Analysis_cox_angina
    Status:
    Failed
    Job identifier:
    jl6gttt3eseidk6x
    Error:
    nonzero_exit: Job exited with error code 137: likely means it ran out of memory
  • Action:
    Analysis_cox_ate
    Status:
    Failed
    Job identifier:
    6d5y4pgmkx3pz2eo
    Error:
    nonzero_exit: Job exited with error code 137: likely means it ran out of memory
  • Action:
    Analysis_cox_hf
    Status:
    Failed
    Job identifier:
    fb4t3de5patuirm5
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    Analysis_cox_vte
    Status:
    Failed
    Job identifier:
    fctcalazq6z75u7s
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    Analysis_cox_stroke_isch
    Status:
    Succeeded
    Job identifier:
    w2crpjcg22ujy6ci
  • Action:
    Analysis_cox_pe
    Status:
    Failed
    Job identifier:
    lj7z276lgozm2boq
    Error:
    nonzero_exit: Job exited with error code 1
  • Action:
    stage2_missing_table1_both
    Status:
    Succeeded
    Job identifier:
    ptjxujurjcjw73sk

Pipeline

Show project.yaml
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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 242:08:39

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-vaccinated
Requested by
Rochelle Knight
Branch
main
Force run dependencies
No
Git commit hash
0957603
Requested actions
  • generate_study_population_electively_unvaccinated
  • generate_study_population_vaccinated
  • generate_study_population_index
  • preprocess_data
  • stage1_data_cleaning_both
  • stage2_missing_table1_both
  • stage4_table2_both
  • stage4_venn_diagram_both
  • Analysis_cox_ami
  • Analysis_cox_stroke_isch
  • Analysis_cox_dvt
  • Analysis_cox_pe
  • Analysis_cox_tia
  • Analysis_cox_stroke_sah_hs
  • Analysis_cox_hf
  • Analysis_cox_angina
  • Analysis_cox_ate
  • Analysis_cox_vte

Code comparison

Compare the code used in this job request