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Job request: 6130

Organisation:
University of Bristol
Workspace:
post-covid-vaccinated
ID:
nkra44qjqw34cwzf
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Rochelle Knight requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population_index
    Status:
    Status: Succeeded
    Job identifier:
    2kiip2ednzuwx5iz
  • Action:
    preprocess_data
    Status:
    Status: Failed
    Job identifier:
    2nsprvcnwkayok53
    Error:
    nonzero_exit: Job exited with error code 137: likely means it ran out of memory
  • Action:
    Analysis_cox_ami
    Status:
    Status: Failed
    Job identifier:
    mhw2hhuohovonxyj
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage2_missing_table1_both
    Status:
    Status: Failed
    Job identifier:
    2hracjvgba6x36ai
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage1_data_cleaning_both
    Status:
    Status: Failed
    Job identifier:
    behce7vm7okbwx6z
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage4_venn_diagram_both
    Status:
    Status: Failed
    Job identifier:
    zozo5ombzk3v2bae
    Error:
    dependency_failed: Not starting as dependency failed
  • Action:
    stage4_table2_both
    Status:
    Status: Failed
    Job identifier:
    eiap3dqhnfqf6c5d
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

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Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 10:23:46

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
post-covid-vaccinated
Requested by
Rochelle Knight
Branch
main
Force run dependencies
No
Git commit hash
3f17262
Requested actions
  • generate_study_population_index
  • preprocess_data
  • stage1_data_cleaning_both
  • stage2_missing_table1_both
  • stage4_table2_both
  • stage4_venn_diagram_both
  • Analysis_cox_ami

Code comparison

Compare the code used in this job request