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Job request: 21587

Organisation:
The London School of Hygiene & Tropical Medicine
Workspace:
long-covid-symptoms
ID:
mtjvyxjebio3ppey
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Kevin Wing requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_community_cases_cohort_omicron
    Status:
    Succeeded
    Job identifier:
    uagbictaqueknfsc
  • Action:
    generate_potential_controls_contemporary_omicron
    Status:
    Succeeded
    Job identifier:
    7fhqhdorbc2qqwom
  • Action:
    correct_case_death_dates_omicron
    Status:
    Succeeded
    Job identifier:
    4bw7ebh45zntpbx6
  • Action:
    correct_contemporary_control_death_dates_omicron
    Status:
    Succeeded
    Job identifier:
    7nsduajab262vajq
  • Action:
    set_case_index_date_omicron
    Status:
    Succeeded
    Job identifier:
    oh5j7gynqobgmhlo
  • Action:
    01_longCovidSymp_split_by_stp_omicron
    Status:
    Succeeded
    Job identifier:
    k4u5lhqevkvczmkx
  • Action:
    checkSTPs_in_original_extract_omicron
    Status:
    Succeeded
    Job identifier:
    553z77u6bteodana
  • Action:
    match_contemporary_stp10_omicron
    Status:
    Succeeded
    Job identifier:
    ymq37dyv2ayahx73
  • Action:
    match_contemporary_stp12_omicron
    Status:
    Succeeded
    Job identifier:
    dg7rukubgd4gx6ay
  • Action:
    match_contemporary_stp13_omicron
    Status:
    Succeeded
    Job identifier:
    kheqmtmyrzdnog4y
  • Action:
    match_contemporary_stp14_omicron
    Status:
    Succeeded
    Job identifier:
    mekclobukowkasyc
  • Action:
    match_contemporary_stp15_omicron
    Status:
    Succeeded
    Job identifier:
    tq4g433srcqpfza7
  • Action:
    match_contemporary_stp16_omicron
    Status:
    Succeeded
    Job identifier:
    x6r4qshzwnp6atqx
  • Action:
    match_contemporary_stp17_omicron
    Status:
    Succeeded
    Job identifier:
    r2appskktlfjkixd
  • Action:
    match_contemporary_stp20_omicron
    Status:
    Succeeded
    Job identifier:
    2pmvsuhvikpjeghu
  • Action:
    match_contemporary_stp21_omicron
    Status:
    Succeeded
    Job identifier:
    2cq2rlmz5d2xop6d
  • Action:
    match_contemporary_stp22_omicron
    Status:
    Succeeded
    Job identifier:
    3bd5snoyyqxuvugx
  • Action:
    match_contemporary_stp23_omicron
    Status:
    Succeeded
    Job identifier:
    qcvwrjgxfu5vtjwk
  • Action:
    match_contemporary_stp24_omicron
    Status:
    Succeeded
    Job identifier:
    c5frqm4hcekttctu
  • Action:
    match_contemporary_stp25_omicron
    Status:
    Succeeded
    Job identifier:
    dtuolkukcosvwhvc
  • Action:
    match_contemporary_stp26_omicron
    Status:
    Succeeded
    Job identifier:
    wbknrhxxbww4rwtt
  • Action:
    match_contemporary_stp27_omicron
    Status:
    Succeeded
    Job identifier:
    z757veznyn37susy
  • Action:
    match_contemporary_stp29_omicron
    Status:
    Succeeded
    Job identifier:
    ev4bi7mob44oxobb
  • Action:
    match_contemporary_stp33_omicron
    Status:
    Succeeded
    Job identifier:
    4y5asbreqp4zebr5
  • Action:
    match_contemporary_stp35_omicron
    Status:
    Succeeded
    Job identifier:
    djpqeshdzn4t2452
  • Action:
    match_contemporary_stp36_omicron
    Status:
    Succeeded
    Job identifier:
    3u7waihshhrbvze2
  • Action:
    checkVars_inMatchedFiles_omicron
    Status:
    Succeeded
    Job identifier:
    p6eymew23b33n3ta
  • Action:
    match_contemporary_stp37_omicron
    Status:
    Succeeded
    Job identifier:
    ybuxc5ui2trikj35
  • Action:
    match_contemporary_stp40_omicron
    Status:
    Succeeded
    Job identifier:
    xbfew7n6k7zoz6lz
  • Action:
    match_contemporary_stp41_omicron
    Status:
    Succeeded
    Job identifier:
    axwb67l2pwjwiz7h
  • Action:
    match_contemporary_stp42_omicron
    Status:
    Succeeded
    Job identifier:
    f4e3puzbajlqvyad
  • Action:
    match_contemporary_stp43_omicron
    Status:
    Succeeded
    Job identifier:
    ke2bwcjkpfhmr7jv
  • Action:
    match_contemporary_stp44_omicron
    Status:
    Succeeded
    Job identifier:
    3apvnk5hsezn4tka
  • Action:
    match_contemporary_stp49_omicron
    Status:
    Succeeded
    Job identifier:
    4oh46vt5nhtr6lyk
  • Action:
    match_contemporary_stp5_omicron
    Status:
    Succeeded
    Job identifier:
    fedanyb2csrncbaz
  • Action:
    match_contemporary_stp6_omicron
    Status:
    Succeeded
    Job identifier:
    4tcgdkthv3cfuh5i
  • Action:
    match_contemporary_stp7_omicron
    Status:
    Succeeded
    Job identifier:
    wdhflvk2zfqbr4sw
  • Action:
    match_contemporary_stp8_omicron
    Status:
    Succeeded
    Job identifier:
    n7ysmo6gjs452xxi
  • Action:
    match_contemporary_stp9_omicron
    Status:
    Succeeded
    Job identifier:
    hta2ingovcdoqbpa
  • Action:
    combine_matched_CASESstps_omicron
    Status:
    Succeeded
    Job identifier:
    6nz5ql6arjawuuxc
  • Action:
    combine_matched_COMPARATORstps_omicron
    Status:
    Succeeded
    Job identifier:
    gocoetycrurpaxia
  • Action:
    add_allVars_cases_omicron
    Status:
    Succeeded
    Job identifier:
    fibpwhkazrzlavgl
  • Action:
    get_consultationCount_cases_omicron
    Status:
    Succeeded
    Job identifier:
    lwlgh36gboru25ki
  • Action:
    get_medicines_cases_omicron
    Status:
    Succeeded
    Job identifier:
    ahjjdn3kyzuqvxfr
  • Action:
    get_symptoms_cases_omicron
    Status:
    Succeeded
    Job identifier:
    jxibowtw5uoubr2k
  • Action:
    add_allVars_contemporary_controls_omicron
    Status:
    Succeeded
    Job identifier:
    fpp2kex3xf6aewzo
  • Action:
    check_contemporary_combinedFiles_omicron
    Status:
    Succeeded
    Job identifier:
    ooh2ocgsrba5jsji
  • Action:
    get_consultationCount_controls_omicron
    Status:
    Succeeded
    Job identifier:
    42dp5hv6jfvanaaa
  • Action:
    get_medicines_controls_omicron
    Status:
    Succeeded
    Job identifier:
    sijfacfsx3f7duhn
  • Action:
    get_symptoms_controls_omicron
    Status:
    Succeeded
    Job identifier:
    3yyukvcguknxu7rs
  • Action:
    checkVars_inCasesAndCOntrolsAfterAddingFurtherVariables_omicron
    Status:
    Succeeded
    Job identifier:
    hkxa6qxzbe4p5zv5
  • Action:
    create_contemporary_analysis_file_omicron
    Status:
    Succeeded
    Job identifier:
    43h2gu4z6dnfk5nj
  • Action:
    data_checks_contemporary_omicron
    Status:
    Succeeded
    Job identifier:
    km7i3fwgf5nt6fzg
  • Action:
    flowCheck_contemporary_omicron
    Status:
    Succeeded
    Job identifier:
    2vbtjcyhxtirzpwo
  • Action:
    time_checks_contemporary_omicron
    Status:
    Succeeded
    Job identifier:
    azu4fz6n4hkh6zox

Pipeline

Show project.yaml
This file is too large to render, try viewing it on GitHub .

Job statistics

Status Count Percentage
Pending 0 0%
Running 0 0%
Succeeded 55 100%
Failed 0 0%

55 / 55 (100%) complete

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 119:36:15

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
long-covid-symptoms
Requested by
Kevin Wing
Branch
master
Force run dependencies
No
Git commit hash
51a69fa
Requested actions
  • generate_community_cases_cohort_omicron
  • generate_potential_controls_contemporary_omicron
  • correct_case_death_dates_omicron
  • correct_contemporary_control_death_dates_omicron
  • set_case_index_date_omicron
  • checkSTPs_in_original_extract_omicron
  • 01_longCovidSymp_split_by_stp_omicron
  • match_contemporary_stp5_omicron
  • match_contemporary_stp6_omicron
  • match_contemporary_stp7_omicron
  • match_contemporary_stp8_omicron
  • match_contemporary_stp9_omicron
  • match_contemporary_stp10_omicron
  • match_contemporary_stp12_omicron
  • match_contemporary_stp13_omicron
  • match_contemporary_stp14_omicron
  • match_contemporary_stp15_omicron
  • match_contemporary_stp16_omicron
  • match_contemporary_stp17_omicron
  • match_contemporary_stp20_omicron
  • match_contemporary_stp21_omicron
  • match_contemporary_stp22_omicron
  • match_contemporary_stp23_omicron
  • match_contemporary_stp24_omicron
  • match_contemporary_stp25_omicron
  • match_contemporary_stp26_omicron
  • match_contemporary_stp27_omicron
  • match_contemporary_stp29_omicron
  • match_contemporary_stp33_omicron
  • match_contemporary_stp35_omicron
  • match_contemporary_stp36_omicron
  • match_contemporary_stp37_omicron
  • match_contemporary_stp40_omicron
  • match_contemporary_stp41_omicron
  • match_contemporary_stp42_omicron
  • match_contemporary_stp43_omicron
  • match_contemporary_stp44_omicron
  • match_contemporary_stp49_omicron
  • checkVars_inMatchedFiles_omicron
  • combine_matched_CASESstps_omicron
  • combine_matched_COMPARATORstps_omicron
  • check_contemporary_combinedFiles_omicron
  • add_allVars_cases_omicron
  • add_allVars_contemporary_controls_omicron
  • get_consultationCount_cases_omicron
  • get_consultationCount_controls_omicron
  • get_symptoms_cases_omicron
  • get_medicines_cases_omicron
  • get_symptoms_controls_omicron
  • get_medicines_controls_omicron
  • checkVars_inCasesAndCOntrolsAfterAddingFurtherVariables_omicron
  • create_contemporary_analysis_file_omicron
  • flowCheck_contemporary_omicron
  • data_checks_contemporary_omicron
  • time_checks_contemporary_omicron

Code comparison

Compare the code used in this job request