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Job request: 21003

Organisation:
PHC, University of Oxford
Workspace:
mainroute_cancer
ID:
mqsekmu6b4b3wwqb
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Emma Mi requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    generate_study_population
    Status:
    Status: Failed
    Job identifier:
    dyrtxsr474itltew
    Error:
    cancelled_by_user: Cancelled by user
  • Action:
    generate_measures
    Status:
    Status: Failed
    Job identifier:
    rt3klz6uyccqakpt
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:
  
  generate_study_population:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_lowerGI --index-date-range "2018-03-01 to 2023-08-01 by month" --skip-existing --output-dir=output/measures --output-format=csv.gz
    outputs:
      highly_sensitive:
        cohort: output/measures/input_*.csv.gz

  generate_measures:
    run: cohortextractor:latest generate_measures --study-definition study_definition_lowerGI --skip-existing --output-dir=output/measures
    needs: [generate_study_population]
    outputs:
      moderately_sensitive:
        measure_csv: output/measures/measure_*.csv

Timeline

  • Created:

  • Started:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
mainroute_cancer
Requested by
Emma Mi
Branch
main
Force run dependencies
Yes
Git commit hash
50af115
Requested actions
  • run_all

Code comparison

Compare the code used in this job request