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Job request: 7073

Organisation:
PHC, University of Oxford
Workspace:
mainroute_cancer
ID:
nf6awxc32g4emeep
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Emma Mi requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: '3.0'

expectations:
  population_size: 1000

actions:

  generate_referral_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_referral
    outputs:
      highly_sensitive:
        cohort: output/input_referral.csv

  generate_symptom_cohort:
    run: cohortextractor:latest generate_cohort --study-definition study_definition_symptom
    outputs:
      highly_sensitive:
        cohort: output/input_symptom.csv

  describe:
    run: python:latest python analysis/report.py
    needs: [generate_referral_cohort, generate_symptom_cohort]
    outputs:
      moderately_sensitive:
        all_figure: output/colorectal_cancer.jpg

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 01:38:25

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
mainroute_cancer
Requested by
Emma Mi
Branch
main
Force run dependencies
Yes
Git commit hash
76d22dd
Requested actions
  • run_all

Code comparison

Compare the code used in this Job Request