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Job request: 20658

Organisation:
Bennett Institute
Workspace:
dmd-codelist-report
ID:
n6wn23hlfqaw3zix
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Jon Massey requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    medication_patients
    Status:
    Status: Failed
    Job identifier:
    ywtxb4nx5tpckpbe
    Error:
    nonzero_exit: Job exited with an error
  • Action:
    generate_deltas
    Status:
    Status: Failed
    Job identifier:
    3iae2k4beom6owl7
    Error:
    dependency_failed: Not starting as dependency failed

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 5000

actions:
  medication_issues:
    run: >
      sqlrunner:latest
        analysis/medications.sql
        --output output/medication_counts.csv.gz
        --dummy-data-file analysis/medication_counts.dummy.csv.gz
    outputs:
      highly_sensitive:
        medication_counts: output/medication_counts.csv.gz
  medication_patients:
    run: >
      sqlrunner:latest
        analysis/patients.sql
        --output output/medication_patient_counts.csv.gz
        --dummy-data-file analysis/medication_patient_counts.dummy.csv.gz
    outputs:
      highly_sensitive:
        medication_counts: output/medication_patient_counts.csv.gz
  generate_deltas:
    needs: [medication_issues, medication_patients]
    run: >
      python:latest
        python analysis/generate_deltas.py
    outputs:
      moderately_sensitive:
        table: output/*deltas.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:07

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Failed
Backend
TPP
Workspace
dmd-codelist-report
Requested by
Jon Massey
Branch
main
Force run dependencies
No
Git commit hash
c9734f9
Requested actions
  • medication_patients
  • generate_deltas

Code comparison

Compare the code used in this job request