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Job request: 20664

Organisation:
Bennett Institute
Workspace:
dmd-codelist-report
ID:
b5e6nnj7ttn3nsjh
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Jon Massey requested one or more actions to be run against real patient data in the project, within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level various outputs were written to. Researchers can never directly view outputs marked as highly_sensitive ; they can only request that code runs against them. Outputs marked as moderately_sensitive can be viewed by an approved researcher by logging into a highly secure environment. Only outputs marked as moderately_sensitive can be requested for release to the public, via a controlled output review service.

Jobs

  • Action:
    run_all
    Status:
    Status: Succeeded
    Job identifier:
    ghnsej6kaigm3vro

Pipeline

Show project.yaml 
version: "3.0"

expectations:
  population_size: 5000

actions:
  medication_issues:
    run: >
      sqlrunner:latest
        analysis/medications.sql
        --output output/medication_counts.csv.gz
        --dummy-data-file analysis/medication_counts.dummy.csv.gz
    outputs:
      highly_sensitive:
        medication_counts: output/medication_counts.csv.gz
  generate_deltas:
    needs: [medication_issues]
    run: >
      python:latest
        python analysis/generate_deltas.py
    outputs:
      moderately_sensitive:
        table: output/*deltas.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime:

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job information

Status
Succeeded
Backend
TPP
Workspace
dmd-codelist-report
Requested by
Jon Massey
Branch
main
Force run dependencies
No
Git commit hash
63873ce
Requested actions
  • run_all

Code comparison

Compare the code used in this Job Request