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Job request: 25416

Organisation:
Bennett Institute
Workspace:
tpp-code-counts
ID:
mzrg4bnpqiui73wf
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Richard Williams requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

  • Action:
    icd10_apcs
    Status:
    Status: Succeeded
    Job identifier:
    yd4ahnpcaax2wu5h
  • Action:
    icd10_ons_deaths
    Status:
    Status: Succeeded
    Job identifier:
    rkspbqmsbo4iuqe7

Pipeline

Show project.yaml 
version: "4.0"

actions:
  icd10_apcs:
    run: >
      sqlrunner:latest
        --output output/icd10_apcs.csv
        --log-file output/icd10_apcs_log.json
        analysis/query_icd10_apcs.sql
    outputs:
      highly_sensitive:
        counts: output/icd10_apcs.csv
        log: output/icd10_apcs_log.json

  icd10_ons_deaths:
    run: >
      sqlrunner:latest
        --output output/icd10_ons_deaths.csv
        --log-file output/icd10_ons_deaths_log.json
        analysis/query_icd10_ons_deaths.sql
    outputs:
      highly_sensitive:
        counts: output/icd10_ons_deaths.csv
        log: output/icd10_ons_deaths_log.json

  validate_output:
    run: python:latest python analysis/validate_output.py
    needs:
      - icd10_apcs
      - icd10_ons_deaths
    outputs:
      moderately_sensitive:
        report: output/validation_report.txt

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:04:25

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
tpp-code-counts
Requested by
Richard Williams
Branch
main
Force run dependencies
No
Git commit hash
971438c
Requested actions
  • icd10_apcs
  • icd10_ons_deaths

Code comparison

Compare the code used in this job request