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Job request: 25420

Organisation:
Bennett Institute
Workspace:
tpp-code-counts
ID:
5btatduidxnn5cei
View repo View project.yaml

This page shows the technical details of what happened when the authorised researcher Richard Williams requested one or more actions to be run against real patient data within a secure environment.

By cross-referencing the list of jobs with the pipeline section below, you can infer what security level the outputs were written to.

The output security levels are:

  • highly_sensitive
    • Researchers can never directly view these outputs
    • Researchers can only request code is run against them
  • moderately_sensitive
    • Can be viewed by an approved researcher by logging into a highly secure environment
    • These are the only outputs that can be requested for public release via a controlled output review service.

Jobs

Pipeline

Show project.yaml 
version: "4.0"

actions:
  icd10_apcs:
    run: >
      sqlrunner:latest
        --output output/icd10_apcs.csv
        --log-file output/icd10_apcs_log.json
        analysis/query_icd10_apcs.sql
    outputs:
      highly_sensitive:
        counts: output/icd10_apcs.csv
        log: output/icd10_apcs_log.json

  icd10_ons_deaths:
    run: >
      sqlrunner:latest
        --output output/icd10_ons_deaths.csv
        --log-file output/icd10_ons_deaths_log.json
        analysis/query_icd10_ons_deaths.sql
    outputs:
      highly_sensitive:
        counts: output/icd10_ons_deaths.csv
        log: output/icd10_ons_deaths_log.json

  validate_output:
    run: python:latest python analysis/validate_output.py
    needs:
      - icd10_apcs
      - icd10_ons_deaths
    outputs:
      moderately_sensitive:
        report: output/validation_report.txt
        apcs_files: output/icd10_apcs_*.csv
        ons_files: output/icd10_ons_deaths_*.csv

Timeline

  • Created:

  • Started:

  • Finished:

  • Runtime: 00:00:19

These timestamps are generated and stored using the UTC timezone on the TPP backend.

Job request

Status
Succeeded
Backend
TPP
Workspace
tpp-code-counts
Requested by
Richard Williams
Branch
main
Force run dependencies
No
Git commit hash
ef952ed
Requested actions
  • validate_output

Code comparison

Compare the code used in this job request