Job request: 901
- Organisation:
- The London School of Hygiene & Tropical Medicine
- Workspace:
- sgtf-cfr-research
- ID:
- xj4tzm7u7dgwmsr5
This page shows the technical details of what happened when the authorised researcher Daniel Grint requested one or more actions to be run against real patient data in the project, within a secure environment.
By cross-referencing the list of jobs with the
pipeline section below, you can infer what
security level
various outputs were written to. Researchers can never directly
view outputs marked as
highly_sensitive
;
they can only request that code runs against them. Outputs
marked as
moderately_sensitive
can be viewed by an approved researcher by logging into a highly
secure environment. Only outputs marked as
moderately_sensitive
can be requested for release to the public, via a controlled
output review service.
Jobs
-
- Job identifier:
-
35cby6fhbmkyquov
Pipeline
Show project.yaml
version: '3.0'
expectations:
population_size: 150000
actions:
generate_cohort:
run: cohortextractor:latest generate_cohort --study-definition study_definition
outputs:
highly_sensitive:
cohort: output/input.csv
crMAIN:
run: stata-mp:latest analysis/cr_analysis_dataset.do
needs: [generate_cohort]
outputs:
moderately_sensitive:
log: logs/cr_analysis_dataset.log
highly_sensitive:
data: output/cr_analysis_dataset.dta
anSUMM:
run: stata-mp:latest analysis/an_summary.do
needs: [crMAIN]
outputs:
moderately_sensitive:
log: logs/an_summary.log
figure1: output/sgtf_perc_region.svg
anRISK_TAB1:
run: stata-mp:latest analysis/an_risk28_table1.do
needs: [crMAIN]
outputs:
moderately_sensitive:
log: logs/an_risk28_table1.log
table1text: output/table1_risk28.txt
table1xlsx: output/table1_risk28.xlsx
anCOX_TAB1:
run: stata-mp:latest analysis/an_cox_table1.do
needs: [crMAIN]
outputs:
moderately_sensitive:
log: logs/an_cox_table1.log
table1text: output/table1_cox.txt
table1xlsx: output/table1_cox.xlsx
anRISK_MOD:
run: stata-mp:latest analysis/an_risk_models.do
needs: [crMAIN]
outputs:
moderately_sensitive:
log: logs/an_risk_models.log
anODDS_MOD:
run: stata-mp:latest analysis/an_logit_models.do
needs: [crMAIN]
outputs:
moderately_sensitive:
log: logs/an_logit_models.log
anCOX_MOD:
run: stata-mp:latest analysis/an_cox_models.do
needs: [crMAIN]
outputs:
moderately_sensitive:
log: logs/an_cox_models.log
figure1: output/unadj_cox_shoen.svg
figure2: output/unadj_cox_km.svg
figure3: output/unadj_cox_haz.svg
figure4: output/minadj_cox_shoen.svg
figure5: output/minadj_cox_km.svg
figure6: output/minadj_cox_haz.svg
Timeline
-
Created:
-
Started:
-
Finished:
-
Runtime: 00:01:07
These timestamps are generated and stored using the UTC timezone on the TPP backend.
Job information
- Status
-
Succeeded
- Backend
- TPP
- Workspace
- sgtf-cfr-research
- Requested by
- Daniel Grint
- Branch
- master
- Force run dependencies
- No
- Git commit hash
- a149b72
- Requested actions
-
-
crMAIN
-
Code comparison
Compare the code used in this Job Request